View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_low_7 (Length: 420)
Name: NF4662_low_7
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 33 - 407
Target Start/End: Complemental strand, 5037623 - 5037248
Alignment:
| Q |
33 |
ctaattattccttgttcttttttagtgaataaagctaattctatgacagcaattgcatggtatttggacagttttataatgacaaaataattataaaagt |
132 |
Q |
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| T |
5037623 |
ctaattattccttgttcttttttagtgaataaagctaattctatgacagttattgcatggtatttgtacagttttataatgacaaaatcattataaaagt |
5037524 |
T |
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| Q |
133 |
gaatgcagaaagaacagataattatctcaaagtccaaagaaaaagataacag--agaacagagccttaaggttaaaacagaatgcatagatctaaacaat |
230 |
Q |
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| T |
5037523 |
gaatgcagaaagaacagataattatctcaaagtccaaagaaaaagataacagaaagaacaga-ccttaaggttaaaacagaatgcatagatctaaacaat |
5037425 |
T |
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| Q |
231 |
tttttgttgtcatttttaagtttaaaactggaagagataaccataatttatggttgagaagttgttatcnnnnnnngaagaatatacattgtagctagca |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5037424 |
tttttgttgtcatttttaagtttaaaactggaagagataaccataatttatggttgagaagttgttatcaaaaaaagaagaatatacattgtagctagca |
5037325 |
T |
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| Q |
331 |
gcactatagtcacgtgaggtgtgaagcaaggaaccacacgaacaccatatcttaaactagatatgatatgataaaaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5037324 |
gcactatagtcacgtgaggtgtgaagcaaggaaccacacgaacaccatatcttaaactagatatgatatgataaaaa |
5037248 |
T |
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