View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_low_8 (Length: 385)
Name: NF4662_low_8
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 29841255 - 29841020
Alignment:
| Q |
3 |
aacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcgcggtttattcacaccttgcttgaagtatccttaggacttttttcag |
102 |
Q |
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| T |
29841255 |
aacaaggttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcacggtttattcgcaccttgcttgaagtatccttaggaattttttcag |
29841156 |
T |
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| Q |
103 |
agagatatttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatggaccataatacagcacaagaccggcattatagtatag--- |
199 |
Q |
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| T |
29841155 |
agagatatttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatggaccataatacagcacaagaccggcattatagtatagtat |
29841056 |
T |
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| Q |
200 |
--tataagaaaccactgtcatgataattctcaatga |
233 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29841055 |
agtataagaaaccactgtcatgataattctcaatga |
29841020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 29830289 - 29830471
Alignment:
| Q |
10 |
ttagtcatgaaatcgggaaaatttacctttcgtgagtgtatagatcgcggtttattcacaccttgcttgaagtatccttaggactttttt-cagagagat |
108 |
Q |
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||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||| |||| |||| |
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| T |
29830289 |
ttagtcatgaactctggaaaatttacctttcgtgggtgtacagatcgcggtttattcgcaccttgcttgaagtatccttgggaatttttttcagaaagat |
29830388 |
T |
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| Q |
109 |
atttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatggaccataatacagcacaagaccggcatta |
191 |
Q |
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| T |
29830389 |
atttcatggtcccccaaagtggtggatttctgcatcatgactgcaagttagatgggccataatacagcacgagaccggcatta |
29830471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 29840460 - 29840338
Alignment:
| Q |
245 |
ttatattattaaccatggaattcttgtataacagacttcattttctatatgcaaaagaacttcatacgacagatatgtgtatactttatactatacgaca |
344 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29840460 |
ttatattattaaccatggaattcttatataacagacttcattttctatatgcaaaagaacttcatacgacagatatgtgtatactttatactatacgaca |
29840361 |
T |
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| Q |
345 |
gataatagcatagcagtgtgtaa |
367 |
Q |
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| T |
29840360 |
gataatagcatagcagtgtgtaa |
29840338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 29831034 - 29831121
Alignment:
| Q |
245 |
ttatattattaaccatggaattcttgtataacagacttcattttctatatgcaaaag---aacttcatacgacagatatgtgtatact |
329 |
Q |
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|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
29831034 |
ttatatcattaaccatggaattcttgtagaacatacttcattttctatatgcaaaagtactacttaatatgacagatatgtgtatact |
29831121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 34623877 - 34624012
Alignment:
| Q |
30 |
atttacctttcgtgagtgtatagatcgcggtttattcacaccttgcttgaagtatccttaggacttttttcagagagatatttcatggtcccccaaagtg |
129 |
Q |
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|||||||| |||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| | |
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| T |
34623877 |
atttacctctcgtaagtatatagatcacggtttattcgcaccttgcttgaagtatccttgggaattttctcagagagatatttcatggtcccccaaagcg |
34623976 |
T |
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| Q |
130 |
gtggatttctgcatcatgactgcaagttagatggac |
165 |
Q |
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| T |
34623977 |
gtggatttctgcatcatgactgcatgttaggtggac |
34624012 |
T |
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