View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4662_low_9 (Length: 377)
Name: NF4662_low_9
Description: NF4662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4662_low_9 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 34685911 - 34685644
Alignment:
| Q |
1 |
tgcttggccaatgtactttcttcctgggagccatcactgatcgatcgttgatatgctgcgatagatagagaaagtaagggaaattattgaacttaaccta |
100 |
Q |
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| T |
34685911 |
tgcttggccaatgtactttcttcctgggagccatcactgatcgatcgttgatatgctgcgatagatagagaaagtaagggaaattattgaacttaaccta |
34685812 |
T |
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| Q |
101 |
aatatcaaaagatagagatgattattagagataagtactaggttttataaaacggatactagctagaatacaaatgtataaaactggacacattagaaac |
200 |
Q |
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| T |
34685811 |
aatatcaaaagatagagatgattattagagataagtactaggttttataaaacgg-----aactagaatacaaatgtataaaactggacacattagaaac |
34685717 |
T |
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| Q |
201 |
aaacnnnnnnngaacactgaaccatgtttgctaactgttgtgtatagctgtagctcttacttacggtgaagaaa |
274 |
Q |
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| T |
34685716 |
aaacaaaaaaagaaca-tgaaccatgtttgctaactgttgtgtatagctgtagctcttacttacagtgaagaaa |
34685644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 34693698 - 34693574
Alignment:
| Q |
8 |
ccaatgtactttcttcctgggagccatcactgatcgatcgttgatatgctgcgatagatagagaaagtaagggaaattattgaactt-aacctaaatatc |
106 |
Q |
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| T |
34693698 |
ccaatgtactttcttgaagggagccatcactgatcgattgttgatatgctgggatagatggagaaattaagacgaattattgaacttgaacctgaatatt |
34693599 |
T |
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| Q |
107 |
aaaagatagagatgattattagaga |
131 |
Q |
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| T |
34693598 |
gaaagatatagatgattattagaga |
34693574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 34693519 - 34693456
Alignment:
| Q |
243 |
tatagctgtagctcttacttacggtgaagaaaactgcttgtttttcacgcaagtgtgtgtgctt |
306 |
Q |
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| T |
34693519 |
tatagttgcagcttttacttacaccgaagaaaactgcttgtttttcacgcaagtgtgtgtgctt |
34693456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 34685645 - 34685607
Alignment:
| Q |
321 |
aatggtgtatgatcaatggaagagaaagagaagaaatat |
359 |
Q |
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| T |
34685645 |
aatggtgtatgatcaatggaagagaaagagaagaaatat |
34685607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 5595 - 5509
Alignment:
| Q |
95 |
aacctaaatatcaaaagatagagatgattattagagataagtactaggttttataaaacggatactagctagaatacaaatgtataa |
181 |
Q |
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||||||||||||||||||| |||| ||||| |||||| ||||||||| |||||||| |||||||| ||||||||||||| ||||| |
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| T |
5595 |
aacctaaatatcaaaagattgagaagattagtagagagaagtactagaatttataaagaggatactaactagaatacaaatttataa |
5509 |
T |
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