View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4663-Insertion-1 (Length: 980)

Name: NF4663-Insertion-1
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4663-Insertion-1
NF4663-Insertion-1
[»] chr1 (2 HSPs)
chr1 (350-980)||(27025982-27026618)
chr1 (8-211)||(27025785-27025988)


Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 350 - 980
Target Start/End: Original strand, 27025982 - 27026618
Alignment:
Q  350 tatcataaaaaaggtgaatgaaatccttgtatataattattatgcaactttttcactcacaatagaagcttttgattgttgtaatcctatagaaggtgat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27025982 tatcataaaaaaggtgaatgaaatccttgtatataattattatgcaactttttcactcacaatagaagcttttgattgttgtaatcctatagaaggtgat 27026081  T
Q  450 gcaaagccattagcactccatcctgatcccagaggagggtgataaacaacaccagaagttctgtagatgaaaggaggaggacgtgcaccagggataacag 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27026082 gcaaagccattagcactccatcctgatcccagaggagggtgataaacaacaccagaagttctgtagatgaaaggaggaggacgtgcaccagggataacag 27026181  T
Q  550 cagtagaagaatgtcctgctaatccttctagtttcagagcatgcatgtgctgcaatagtcttttcctatcctctttcttctgagcaaaatcaacatacag 649  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27026182 cagtagaagaatgtcctgctaatccttctagtttcggagcatgcatgtgctgcaatagtcttttcctatcctctttcttctgagcaaaatcaacatacag 27026281  T
Q  650 tggtttgccatggaacatgcaccctgtagcatataacatcaacttaatggatgcataagcactaatataacttctaacttggtaaaatatgtctatccnn 749  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  27026282 tggtttgccatggaacatgcaccctgtagcatataacatcaacttaattgatgcataagcactaatataacttctaacttggtaaaatatgtctatccaa 27026381  T
Q  750 nnnnntaataatgaaacataaccaaagttgtgtagagaacatggacctaaatggacttgttacttggatacaaatattttaatatcattaaaaaagtttc 849  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27026382 aaaaataataatgaaacataaccaaagttgtgtagagaacatggacctaaatggacttgttacttggatacaaatattttaatatcattaaaaaagtttc 27026481  T
Q  850 ttaaaaggaagtaaggaacagggatgtaaattttc-agatcagaacttcaatcaaaattcagtatacag-aaataacattt-acatatatctaatctctc 946  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  27026482 ttaaaaggaagtaaggaacagggatgtaaattttcaagatcagaacttcaatcaaaattcagtacacagaaaataacatttaacatatatctaatctctc 27026581  T
Q  947 -aattat-atcc-ataaatatacataacatgcagtat 980  Q
     |||||| |||| ||||||||||||||||||||||||    
T  27026582 aaattataatccaataaatatacataacatgcagtat 27026618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 27025785 - 27025988
Alignment:
Q  8 tctcctgctggcatccactggccacgttcttggcctgtcctgagtgagtaatcgactcttttgaatttgtattatcttttgtctcacccaggattatcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27025785 tctcctgctggcatccactggccacgttcttggcctgtcctgagtgagtaatcgactcttttgaatttgtattatcttttgtctcacccaggattatcat 27025884  T
Q  108 gtgcggcttaccgaagttggaaatctgtggatgaaagaaataaaatgaaaatatatatcaaagacttgttaaaactaacatcaaaataggattagtctat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27025885 gtgcggcttaccgaagttggaaatctgtggatgaaagaaataaaatgaaaatatatatcaaagacttgttaaaactaacatcaaaataggattagtctat 27025984  T
Q  208 cata 211  Q
    ||||    
T  27025985 cata 27025988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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