View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4663-Insertion-2 (Length: 609)

Name: NF4663-Insertion-2
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4663-Insertion-2
NF4663-Insertion-2
[»] chr7 (7 HSPs)
chr7 (440-609)||(30086184-30086353)
chr7 (312-354)||(30085760-30085802)
chr7 (312-352)||(10715977-10716017)
chr7 (378-407)||(30085824-30085853)
chr7 (309-353)||(20588288-20588332)
chr7 (309-353)||(38974574-38974618)
chr7 (309-353)||(44434349-44434393)
[»] chr3 (9 HSPs)
chr3 (440-609)||(54717428-54717597)
chr3 (312-354)||(54717980-54718022)
chr3 (465-512)||(14770392-14770439)
chr3 (312-354)||(11962004-11962046)
chr3 (312-354)||(11962857-11962899)
chr3 (465-510)||(11962175-11962220)
chr3 (378-407)||(54717928-54717957)
chr3 (309-353)||(42996546-42996590)
chr3 (308-352)||(45125229-45125273)
[»] chr8 (9 HSPs)
chr8 (440-609)||(43657756-43657925)
chr8 (440-609)||(3340334-3340503)
chr8 (312-354)||(3340205-3340247)
chr8 (312-354)||(3345506-3345548)
chr8 (312-353)||(43658314-43658355)
chr8 (312-354)||(35409852-35409894)
chr8 (314-354)||(31191602-31191642)
chr8 (378-407)||(43658256-43658285)
chr8 (309-353)||(27300651-27300695)
[»] chr6 (10 HSPs)
chr6 (440-609)||(28932516-28932685)
chr6 (153-310)||(13485479-13485636)
chr6 (12-121)||(13485340-13485449)
chr6 (312-354)||(28932088-28932130)
chr6 (312-354)||(21004256-21004298)
chr6 (312-354)||(21003507-21003549)
chr6 (378-407)||(28932156-28932185)
chr6 (378-407)||(28932718-28932747)
chr6 (309-353)||(929340-929384)
chr6 (465-536)||(21003670-21003742)
[»] scaffold0250 (2 HSPs)
scaffold0250 (467-609)||(22210-22352)
scaffold0250 (312-352)||(21977-22017)
[»] chr2 (8 HSPs)
chr2 (467-609)||(17102105-17102247)
chr2 (312-352)||(17102443-17102483)
chr2 (312-354)||(7537552-7537594)
chr2 (316-352)||(17097054-17097090)
chr2 (312-354)||(7538401-7538443)
chr2 (309-354)||(19885993-19886038)
chr2 (309-353)||(12542275-12542319)
chr2 (309-353)||(37551876-37551920)
[»] scaffold0005 (1 HSPs)
scaffold0005 (10-71)||(168559-168620)
[»] chr4 (13 HSPs)
chr4 (10-71)||(14648672-14648733)
chr4 (312-354)||(3066659-3066701)
chr4 (312-354)||(41788197-41788239)
chr4 (312-354)||(19693154-19693196)
chr4 (312-354)||(19703739-19703781)
chr4 (473-537)||(41787312-41787377)
chr4 (312-354)||(41787188-41787230)
chr4 (309-353)||(6289329-6289373)
chr4 (309-353)||(9119537-9119581)
chr4 (309-353)||(9592264-9592308)
chr4 (309-353)||(18962005-18962049)
chr4 (309-353)||(19725755-19725799)
chr4 (309-353)||(50073429-50073473)
[»] scaffold1171 (1 HSPs)
scaffold1171 (465-536)||(1117-1189)
[»] chr1 (12 HSPs)
chr1 (473-549)||(13110708-13110785)
chr1 (473-549)||(13098292-13098369)
chr1 (312-354)||(13099173-13099215)
chr1 (312-354)||(20595995-20596037)
chr1 (312-354)||(13110576-13110618)
chr1 (312-354)||(25820685-25820727)
chr1 (312-353)||(19968417-19968458)
chr1 (309-353)||(16318803-16318847)
chr1 (309-353)||(22182549-22182593)
chr1 (309-353)||(29153358-29153402)
chr1 (309-353)||(36196981-36197025)
chr1 (309-353)||(37696384-37696428)
[»] scaffold0236 (1 HSPs)
scaffold0236 (309-349)||(22953-22993)
[»] scaffold0039 (1 HSPs)
scaffold0039 (309-353)||(55287-55331)
[»] scaffold0021 (1 HSPs)
scaffold0021 (309-353)||(157409-157453)
[»] chr5 (1 HSPs)
chr5 (309-353)||(8006118-8006162)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 9e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 440 - 609
Target Start/End: Complemental strand, 30086353 - 30086184
Alignment:
Q  440 gtagagtcacgtgctgttagttggaaagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 539  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30086353 gtagagtcacgtgctgttagttggaaagaaattagggtttaaaaacccccaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 30086254  T
Q  540 gtccttgttcatccttctcattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 609  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30086253 gtccttgttcatccttcacattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 30086184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 30085760 - 30085802
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  30085760 gctgacgtggcactcacatcccattagtgaggtgccacgtgta 30085802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 10715977 - 10716017
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtg 352  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  10715977 gctgacgtggcactcacatcccattagtgaggtgccacgtg 10716017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 30085824 - 30085853
Alignment:
Q  378 aaaattcatcctgttatttttaaattggac 407  Q
    ||||||||||||||||||||||||||||||    
T  30085824 aaaattcatcctgttatttttaaattggac 30085853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 20588332 - 20588288
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  20588332 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 20588288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 38974618 - 38974574
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  38974618 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 38974574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 44434393 - 44434349
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  44434393 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 44434349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 9e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 440 - 609
Target Start/End: Original strand, 54717428 - 54717597
Alignment:
Q  440 gtagagtcacgtgctgttagttggaaagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 539  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54717428 gtagagtcacgtgctgttagttggaaagaaattagggtttaaaaacccccaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 54717527  T
Q  540 gtccttgttcatccttctcattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 609  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54717528 gtccttgttcatccttcacattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 54717597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 54718022 - 54717980
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  54718022 gctgacgtggcactcacatcccattagtgaggtgccacgtgta 54717980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 512
Target Start/End: Complemental strand, 14770439 - 14770392
Alignment:
Q  465 aagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcga 512  Q
    ||||||| |||||||||||| ||| ||||||| |||||||||||||||    
T  14770439 aagaaattagggtttaaaaatccccaatttccaaaatctgcaaatcga 14770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 11962004 - 11962046
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||    
T  11962004 gctgacgtggcacccacatcctattagtgaggtgccacgtgta 11962046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 11962899 - 11962857
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| || |||||||||||||| |||||||||||    
T  11962899 gctgacgtggcacccatatcccattagtgaggtgccacgtgta 11962857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 11962175 - 11962220
Alignment:
Q  465 aagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatc 510  Q
    ||||||| |||||| ||||||||| ||||||||||||||| |||||    
T  11962175 aagaaattagggttcaaaaacccccaatttcccaaatctgaaaatc 11962220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 54717957 - 54717928
Alignment:
Q  378 aaaattcatcctgttatttttaaattggac 407  Q
    ||||||||||||||||||||||||||||||    
T  54717957 aaaattcatcctgttatttttaaattggac 54717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 42996546 - 42996590
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  42996546 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 42996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 45125229 - 45125273
Alignment:
Q  308 tttcgctgacgtggcactcacatcccattagtgagatgccacgtg 352  Q
    ||||||||||||||||| |||||||| | |||||| |||||||||    
T  45125229 tttcgctgacgtggcacccacatcccttaagtgaggtgccacgtg 45125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 440 - 609
Target Start/End: Original strand, 43657756 - 43657925
Alignment:
Q  440 gtagagtcacgtgctgttagttggaaagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 539  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43657756 gtagagtcacgtgctgttagttggaaagaaattagggtttaaaaacccccaatttcccaaaactgcaaatcgattaaaaacaccttcttctccaatcgcc 43657855  T
Q  540 gtccttgttcatccttctcattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 609  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43657856 gtccttgttcatccttcacattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 43657925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 440 - 609
Target Start/End: Original strand, 3340334 - 3340503
Alignment:
Q  440 gtagagtcacgtgctgttagttggaaagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 539  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  3340334 gtagagtcacgtgctgtttgttggaaagaaattagggtttaaaaacccccaatttcccaaatctgcaaatcgatttaaaacagcttcttctccaatcgcc 3340433  T
Q  540 gtccttgttcatccttctcattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3340434 gtccttgttcatccttctcattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 3340503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 3340205 - 3340247
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  3340205 gctgacgtggcactcacatcccattagtgaggtgccacgtgta 3340247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 3345548 - 3345506
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  3345548 gctgacgtggcactcacatcccattagtgaggtgccacgtgta 3345506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 43658355 - 43658314
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  43658355 gctgacgtggcactcacatcccattagtgaggtgccacgtgt 43658314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 35409852 - 35409894
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  35409852 gctgacgtggcacccacatcccattagtgaggtgccacgtgta 35409894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 31191642 - 31191602
Alignment:
Q  314 tgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||| ||||||||||||||||| |||||||||||    
T  31191642 tgacgtggcacccacatcccattagtgaggtgccacgtgta 31191602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 43658285 - 43658256
Alignment:
Q  378 aaaattcatcctgttatttttaaattggac 407  Q
    ||||||||||||||||||||||||||||||    
T  43658285 aaaattcatcctgttatttttaaattggac 43658256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 27300695 - 27300651
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||| |||||||||||| | |||||| ||||||||||    
T  27300695 ttcgctgacgtgacactcacatcccttaagtgaggtgccacgtgt 27300651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 440 - 609
Target Start/End: Complemental strand, 28932685 - 28932516
Alignment:
Q  440 gtagagtcacgtgctgttagttggaaagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 539  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28932685 gtagagtcacgtgctgttagttggaaagaaattagggtttaaaaaaccccaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgcc 28932586  T
Q  540 gtccttgttcatccttctcattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 609  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28932585 gtccttgttcatccttcacattcgatttcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 28932516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 153 - 310
Target Start/End: Original strand, 13485479 - 13485636
Alignment:
Q  153 cgttgagcctcagagcaacattactaggccggcaaccttcaatagtattcacaatcttagtactcacaccttgattagcctctgtatgcttaatattttg 252  Q
    |||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13485479 cgttgatcctcggagcaacattactaggcaggcaaccttccatagtattcacaatcttagtactcacaccttgattagcctctgtattcttaatattttg 13485578  T
Q  253 attctcaaccaattcaatttggggatgcttagagagcacagacacatcaacaacattt 310  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13485579 gttctcaaccaattcaatttggggatgcttagagagcacagacacatcaacaacattt 13485636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 13485340 - 13485449
Alignment:
Q  12 caacttttcttctactagagaacacgatgtctaggacatcatcctcaacatttgactcagtatctcaagagggaacctgcttccgtggggattctagagg 111  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13485340 caacttttcttctactagagaacatgatgtctaggacatcatcctcaacatttgactcagtatctcaagagggaacctgcttccttggggattctagagg 13485439  T
Q  112 actcatgagg 121  Q
    ||||||||||    
T  13485440 actcatgagg 13485449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 28932088 - 28932130
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  28932088 gctgacgtggcactcacatcccattagtgaggtgccacgtgta 28932130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 21004298 - 21004256
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  21004298 gctgacgtggcacccacatcccattagtgaggtgccacgtgta 21004256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 21003507 - 21003549
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||    
T  21003507 gctgacgtgacacccacatcccattagtgaggtgccacgtgta 21003549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 28932156 - 28932185
Alignment:
Q  378 aaaattcatcctgttatttttaaattggac 407  Q
    ||||||||||||||||||||||||||||||    
T  28932156 aaaattcatcctgttatttttaaattggac 28932185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 28932747 - 28932718
Alignment:
Q  378 aaaattcatcctgttatttttaaattggac 407  Q
    ||||||||||||||||||||||||||||||    
T  28932747 aaaattcatcctgttatttttaaattggac 28932718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 929384 - 929340
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  929384 ttcgctgacgtggcacacacatcccttaagtgaggtgccacgtgt 929340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 536
Target Start/End: Original strand, 21003670 - 21003742
Alignment:
Q  465 aagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgat-taaaaacaccttcttctccaatc 536  Q
    ||||||| |||||| ||||||||| |||||  |||||||| ||||| || | |||||| ||||||||||||||    
T  21003670 aagaaattagggttcaaaaacccccaatttttcaaatctgaaaatccatctcaaaacatcttcttctccaatc 21003742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 467 - 609
Target Start/End: Original strand, 22210 - 22352
Alignment:
Q  467 gaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgccgtccttgttcatccttctcattcgatt 566  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  22210 gaaattagggtttaaaaacccccaatttcccaaatttgcaaatcgattaaaaacaccatcttctccaatcgccgtccctgttcatccttctcattcgatt 22309  T
Q  567 tcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 609  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  22310 tcgtcctcaaaatcctccttcttctcaaatcgttgtcctttct 22352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 21977 - 22017
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtg 352  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  21977 gctgacgtggcactcacatcccattagtgaggtgccacgtg 22017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 467 - 609
Target Start/End: Complemental strand, 17102247 - 17102105
Alignment:
Q  467 gaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgattaaaaacaccttcttctccaatcgccgtccttgttcatccttctcattcgatt 566  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  17102247 gaaattagggtttaaaaacccccaatttcccaaatttgcaaatcgattaaaaacaccatcttctccaatcgccgtccctgttcatccttctcattcgatt 17102148  T
Q  567 tcctcctcaaaatcctccttcttctcaaatcgttgtcctttct 609  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  17102147 tcgtcctcaaaatcctccttcttctcaaatcgttgtcctttct 17102105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 17102483 - 17102443
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtg 352  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  17102483 gctgacgtggcactcacatcccattagtgaggtgccacgtg 17102443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 7537552 - 7537594
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  7537552 gctgacgtggcacccacatcccattagtgaggtgccacgtgta 7537594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 17097054 - 17097090
Alignment:
Q  316 acgtggcactcacatcccattagtgagatgccacgtg 352  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17097054 acgtggcactcacatcccattagtgaggtgccacgtg 17097090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 7538443 - 7538401
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||    
T  7538443 gctgacgtggcacccacatcctattagtgaggtgccacgtgta 7538401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 19885993 - 19886038
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    |||||||||||||||| |||| ||||| |||||| |||||||||||    
T  19885993 ttcgctgacgtggcacccacaccccataagtgaggtgccacgtgta 19886038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 12542275 - 12542319
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  12542275 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 12542319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 37551920 - 37551876
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||| |||||||||||| | |||||| ||||||||||    
T  37551920 ttcgctgacgtgacactcacatcccttaagtgaggtgccacgtgt 37551876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 168620 - 168559
Alignment:
Q  10 accaacttttcttctactagagaacacgatgtctaggacatcatcctcaacatttgactcag 71  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||    
T  168620 accaacttttcttctactagaggacacgatgtccaggacatcatcctcaacatctggctcag 168559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 14648672 - 14648733
Alignment:
Q  10 accaacttttcttctactagagaacacgatgtctaggacatcatcctcaacatttgactcag 71  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||    
T  14648672 accaacttttcttctactagaggacacgatgtccaggacatcatcctcaacatctggctcag 14648733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 3066701 - 3066659
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  3066701 gctgacgtggcactcacatcccattagtgaggtgccacgtgta 3066659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 41788239 - 41788197
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  41788239 gctgacgtggcactcacatcccattagtgaggtgccacgtgta 41788197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 19693154 - 19693196
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  19693154 gctgacgtggcacccacatcccattagtgaggtgccacgtgta 19693196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 19703739 - 19703781
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  19703739 gctgacgtggcacccacatcccattagtgaggtgccacgtgta 19703781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 473 - 537
Target Start/End: Original strand, 41787312 - 41787377
Alignment:
Q  473 agggtttaaaaacccctaatttcccaaatctgcaaatcga-ttaaaaacaccttcttctccaatcg 537  Q
    |||||||||||||||| |||||||||||| ||||||||||  | ||  ||||||||||||||||||    
T  41787312 agggtttaaaaacccccaatttcccaaatatgcaaatcgacctcaatccaccttcttctccaatcg 41787377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 41787188 - 41787230
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||    
T  41787188 gctgacgtggcacccacattccattagtgaggtgccacgtgta 41787230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 6289329 - 6289373
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  6289329 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 6289373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 9119537 - 9119581
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  9119537 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 9119581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 9592308 - 9592264
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  9592308 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 9592264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 18962049 - 18962005
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  18962049 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 18962005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 19725799 - 19725755
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  19725799 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 19725755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 50073473 - 50073429
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  50073473 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 50073429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 536
Target Start/End: Original strand, 1117 - 1189
Alignment:
Q  465 aagaaatcagggtttaaaaacccctaatttcccaaatctgcaaatcgat-taaaaacaccttcttctccaatc 536  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||| | |||||| ||||||||||||||    
T  1117 aagaaattagggtttaaaaacccccaatttcccaaatctgaaaatcgatctcaaaacatcttcttctccaatc 1189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 473 - 549
Target Start/End: Original strand, 13110708 - 13110785
Alignment:
Q  473 agggtttaaaaacccctaatttcccaaatctgcaaatcga-ttaaaaacaccttcttctccaatcgccgtccttgttc 549  Q
    |||||||||||||||| |||||||||||||||||||||||  | ||  ||||||||||||||||||  ||||||||||    
T  13110708 agggtttaaaaacccccaatttcccaaatctgcaaatcgacctcaatccaccttcttctccaatcgttgtccttgttc 13110785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 549
Target Start/End: Original strand, 13098292 - 13098369
Alignment:
Q  473 agggtttaaaaacccctaatttcccaaatctgcaaatcga-ttaaaaacaccttcttctccaatcgccgtccttgttc 549  Q
    |||||||||||||||| ||||||||||||||||||||| |  | ||  ||||||||||||||||||  ||||||||||    
T  13098292 agggtttaaaaacccccaatttcccaaatctgcaaatccacctcaatccaccttcttctccaatcgttgtccttgttc 13098369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 13099215 - 13099173
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  13099215 gctgacgtggcacccacatcccattagtgaggtgccacgtgta 13099173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 20596037 - 20595995
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  20596037 gctgacgtggcacccacatcccattagtgaggtgccacgtgta 20595995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 13110576 - 13110618
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||    
T  13110576 gctgacgtggcacccacatcccattagtgaggtgccacatgta 13110618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 25820727 - 25820685
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgta 354  Q
    ||||||||||||| ||||||||||||||||  |||||||||||    
T  25820727 gctgacgtggcacccacatcccattagtgaagtgccacgtgta 25820685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 19968458 - 19968417
Alignment:
Q  312 gctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||||||||| | |||||| ||||||||||    
T  19968458 gctgacgtggcactcacatcccttaagtgaggtgccacgtgt 19968417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 16318803 - 16318847
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  16318803 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 16318847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 22182593 - 22182549
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  22182593 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 22182549  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 29153402 - 29153358
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  29153402 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 29153358  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 36197025 - 36196981
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  36197025 ttcgctgacgtggcacgcacatcccttaagtgaggtgccacgtgt 36196981  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 37696384 - 37696428
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  37696384 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 37696428  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 22953 - 22993
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccac 349  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  22953 ttcgctgacgtggcacccacatccctttagtgaggtgccac 22993  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 55331 - 55287
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  55331 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 55287  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 157409 - 157453
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||    
T  157409 ttcgctgacgtggcacccacatcccttaagtgaggtgccacgtgt 157453  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 8006118 - 8006162
Alignment:
Q  309 ttcgctgacgtggcactcacatcccattagtgagatgccacgtgt 353  Q
    |||||||||||||||| |||||||| | ||||||||||| |||||    
T  8006118 ttcgctgacgtggcacccacatcccttaagtgagatgccgcgtgt 8006162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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