View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4663-Insertion-3 (Length: 468)
Name: NF4663-Insertion-3
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4663-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 3665656 - 3666081
Alignment:
| Q |
8 |
attttatatattattgtgatgtgatgcgtcaagactaatacacatttagatgattacatcgatgtagtttgatctcttctcttttaagtcgtaccaatga |
107 |
Q |
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| T |
3665656 |
attttatatattattgtgatgtgatgcgtcaagactaatacacatttggatgattacatcgatgtagtttgatctcttatcttt-aactcgtaccaatga |
3665754 |
T |
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| Q |
108 |
gggtggatctagctagcagaagggacc------ccagtatgtttataactaatgttcgatcattgaccgagagacatacatggaaactcattaaatgaca |
201 |
Q |
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| T |
3665755 |
gggtggatctagctagcagaagggaccaaactgccagtacgtttataaataatgttcgattattgaccgagagacgtacatggaaactaattaaatgaca |
3665854 |
T |
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| Q |
202 |
aatattttatataacatactgaacgaaaataaaaggatctgattcaaacatttaaagaaaatattttccgtttgttatatagagnnnnnnntagtattat |
301 |
Q |
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| T |
3665855 |
aatattttatataacatactgaacgaaaataaaaggatctgattcaaacattcaaagaaaatattttccgtttgttatataaagaaaaaaatagtattat |
3665954 |
T |
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| Q |
302 |
ttttctgccaaattgtccacaaccaaatagtccatatctacattttggaccattttagtaacggtttagatggtctcaagaaataaaaaatattggcgca |
401 |
Q |
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| T |
3665955 |
ttttctgccaaattgtcgacatccaaatagtccatgtttacattttgga-ctttttagtaacggtttagatggtctcaagaaataaaagaaattgccgca |
3666053 |
T |
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| Q |
402 |
ttcactgcatgctttcctggagttacta |
429 |
Q |
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| T |
3666054 |
ttcactgcatgctctcctggagttacta |
3666081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 3675300 - 3675389
Alignment:
| Q |
181 |
atggaaactcattaaatgacaaatattttatataacatactgaacgaaaataaaaggatctgattcaaacatttaaagaaaatattttcc |
270 |
Q |
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| T |
3675300 |
atggaaactcattaaatgacaaatatttggtataacataccaaacgaaaattaaaggagttgattcaagcattcaaagaaaatcttttcc |
3675389 |
T |
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