View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4663-Insertion-4 (Length: 445)
Name: NF4663-Insertion-4
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4663-Insertion-4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 154 - 445
Target Start/End: Original strand, 2964490 - 2964789
Alignment:
| Q |
154 |
aaatatgattaatgagaatgagcatga------aaatgg--taatactatccaaaaatttatccatgctctacagttcctctcttaggcaccaaagtaaa |
245 |
Q |
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| T |
2964490 |
aaatatgattaatgagaatgagcatgaccatgaaaatggggtaatactatccaaaaatttatccatactctaccgttcctctcttaggcaccaaagtaaa |
2964589 |
T |
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| Q |
246 |
tcataaaatacagttcctcacttaatattacgccaaagaattattggcatctttaacactcatcaagaacatgcagagttttttcaaaaggaacatgcag |
345 |
Q |
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| T |
2964590 |
tcataaaatacagttcctcacttaatattacgccaaagaattattgccatctttaacactcatcaagaacatgcagagttttttcaaaaggaacatgcag |
2964689 |
T |
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| Q |
346 |
agttgtaaacaaaatttagggaaagtaagtgcaacaaaggataaaattaaccaaacaacaatgtcaaaagcatttagggacaaatttttaaaacatgtga |
445 |
Q |
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| T |
2964690 |
agttgtaaacaaaatttagggaaagtaagtgcaacaaaggataaaattaaccaaacaacaatgtcaatagaatttagggacaaatttttataacatgtga |
2964789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 95 - 326
Target Start/End: Original strand, 2945119 - 2945346
Alignment:
| Q |
95 |
aagtgacaactttacttgtctaaagcgtgaaaatgacaatgttaatagtaacttgcataaaatatgattaatgagaatgagcatgaaaatggtaatacta |
194 |
Q |
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| T |
2945119 |
aagtgacatctttacttgtctaaagagtgaaaatgacaatgtta-------cttgcttaaaatgttattaatgagaatgagcatgaaaatggtaatacta |
2945211 |
T |
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| Q |
195 |
tccaaaaatttatccatgctctacagttcctctcttaggcaccaaagtaaatcataaaatacagttcctcact---taatattacgccaaagaattattg |
291 |
Q |
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| T |
2945212 |
tgcaaaagtttatccatactctacggttcctctcttaggcaccaaagtaaatcataaaatatagttactcacttaataatattacgccaaagaattattg |
2945311 |
T |
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| Q |
292 |
gcatctttaacactcatcaagaacatgcagagttt |
326 |
Q |
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| T |
2945312 |
gcctctttaacactcatcaagaacatgcagagttt |
2945346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 2964372 - 2964492
Alignment:
| Q |
7 |
attttcgct-atatccacaagcttgacatgaatattttttctatatgaaaaaggatagaaacatcataacaaggagtgagagagaaatgaagtgacaact |
105 |
Q |
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| T |
2964372 |
attttcgcttatatccacaagcttgacatgaatattttttctatatgaaaaaggatagaaacatcataacaaagagtgagagagaaatgaagtgacaact |
2964471 |
T |
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| Q |
106 |
ttacttgtctaaagcgtgaaa |
126 |
Q |
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| T |
2964472 |
ttacttgtctaaagcgtgaaa |
2964492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 2920040 - 2920140
Alignment:
| Q |
19 |
tccacaagcttgacatgaatattttttctatatgaaaaaggatagaaacatcataacaaggagtgagagagaaatgaagtgacaactttacttgtctaaa |
118 |
Q |
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| T |
2920040 |
tccacaagcttggcatgaatcctttttctat-tggaaaaggatagaaacatcataacaaggagtaagagagaaaagaaatgacaactttatttgtttaaa |
2920138 |
T |
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| Q |
119 |
gc |
120 |
Q |
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|| |
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| T |
2920139 |
gc |
2920140 |
T |
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