View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4663-Insertion-5 (Length: 429)
Name: NF4663-Insertion-5
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4663-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 52 - 429
Target Start/End: Original strand, 29210581 - 29210962
Alignment:
| Q |
52 |
taaaaattaatccatatttttcttctatttttattttgtgctttatatacctaccaaccacaaggtggacaactgacaaggacaagggtcgcatgatccc |
151 |
Q |
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| T |
29210581 |
taaaaattaatccatatttttcttctatttttattttgtgctttatatacctaccaaccacaaggtggacaactgacaaggacaagggtcgcatgatccc |
29210680 |
T |
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| Q |
152 |
-----accgatcctttgtatcattttgaaaaagtgattcaaactccatggaccatgatctatattatcatcactttaatttgtcaagtgaataaatagta |
246 |
Q |
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| T |
29210681 |
cacccaccgatcctttgtatcattttgaaaaagtgattcaaactccatggaccatgatctatattatcatcactttaatttgtcaagtgaataaatagta |
29210780 |
T |
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| Q |
247 |
tagtagtatatactatttatgttatttaagcacattacacacacatactaagtataattctaattaaataaacccaagcctgccaaaatagaatccaacg |
346 |
Q |
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| T |
29210781 |
tagtagtatatactatttatgttatttaagcacattacacacacatactaagtataattctaattaaataaacccaagcctgccaaaatagaatccaacg |
29210880 |
T |
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| Q |
347 |
cagcgcattcatcttgaacagagaccaaaatttattatttttctcataataataagattaagaatcattgtaccttattacta |
429 |
Q |
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| T |
29210881 |
cagcgcattcatcttgaacagagaccaaaa-ttattatttttctcataataataagattaagaatcattgtaccttattacta |
29210962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 29210359 - 29210412
Alignment:
| Q |
7 |
aagaaagtcacactatattgtgatttgattgaatgttatggtgcataaaaatta |
60 |
Q |
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| T |
29210359 |
aagaaagtcacactatattgtgatttgattgaatgttatggtgcataaaaatta |
29210412 |
T |
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