View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4663_high_1 (Length: 507)
Name: NF4663_high_1
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4663_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 144 - 490
Target Start/End: Original strand, 2964030 - 2964377
Alignment:
| Q |
144 |
gttgtacagatacaataataaaaaagtttgagattgcgaataaatatannnnnnn-aatcagtaaatttattaggcaaaaggaaaattatatatattata |
242 |
Q |
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| T |
2964030 |
gttgtaccgatacaataataaaaaagtttgagattgcgaataaatatattttttttaatcagtaaatttattaggcaaaaggaaaattatatatattata |
2964129 |
T |
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| Q |
243 |
atattcacaagacaccattagaagctgaaagtaatagaacagtagatgagtttcaataaatttaccatctgtgagttgcatcaacagtgagttgcatctc |
342 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2964130 |
atattcacaagacaccattagaagctgaaagcaatagaacagtagatgagtttcaataaatttaccatctgtgagttgcatcaatagtgagttgcatctc |
2964229 |
T |
|
| Q |
343 |
acaatctaatatcatcaatatcattaactgggttaacctgcacaatcacacaaagataatgcaagtattataacctcaaaagaaagcttgtttaaagtat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2964230 |
acaatctaatatcatcaatatcattaactgggttaacctgcacaatcacacaaagataatgcaagtattataacctcaaaagaaagcttgtttaaagtat |
2964329 |
T |
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| Q |
443 |
atgtgtgtgtaaagaataagtgcatgtttcacagctcagaagattttc |
490 |
Q |
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| T |
2964330 |
atgtgtgtgtaaagaataagtgcatgtttcacagctcagaagattttc |
2964377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 2963900 - 2963965
Alignment:
| Q |
14 |
gagatgtctcccaaaaaatcaaaaccacttagagaaacagatcttataaatcaattcttccacatc |
79 |
Q |
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| T |
2963900 |
gagatgtctcccaaaaaatcaaaaccacttagagaaacagatcttataaatcaattcttccacatc |
2963965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 415
Target Start/End: Original strand, 2919803 - 2919884
Alignment:
| Q |
336 |
gcatctcacaatctaatatc--atcaatatcattaactgggttaacctgcacaatcacacaaagataatgcaagtattataa |
415 |
Q |
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| T |
2919803 |
gcatctcacaatctaatatcttatcaatatcattaagtgggctaacctgcacagtcacacaaagagaatgcaagtattataa |
2919884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 2919625 - 2919697
Alignment:
| Q |
239 |
tataatattcacaagacaccattagaagctgaaagtaatagaacagtagatgagtttcaataaatttaccatc |
311 |
Q |
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| T |
2919625 |
tataagattcacaagacaccgttagaagctgaaagtaactaaacagtagatgagtttcaataagtttaccatc |
2919697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 2943079 - 2943142
Alignment:
| Q |
16 |
gatgtctcccaaaaaatcaaaaccacttagagaaacagatcttataaatcaattcttccacatc |
79 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||| |
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| T |
2943079 |
gatgcctcccaaaaaatcaaaaccacttagggaaacagatcttataaaccaattcctccgcatc |
2943142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 2943204 - 2943312
Alignment:
| Q |
145 |
ttgtacagatacaataataaaaaagtttgagattgcgaataaatatannnnnnnaatcagtaaatttattaggcaaaaggaaaattatatata--ttata |
242 |
Q |
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|||||| ||||||||||||||| | |||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
2943204 |
ttgtaccgatacaataataaaagaagttgagattgcaaataaatat-tttttttaatcattaaatttattaggcaaaaggaaaactatatatatgttata |
2943302 |
T |
|
| Q |
243 |
atattcacaa |
252 |
Q |
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|||||||||| |
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|
| T |
2943303 |
atattcacaa |
2943312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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