View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4663_high_2 (Length: 424)
Name: NF4663_high_2
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4663_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 30371234 - 30370838
Alignment:
| Q |
18 |
attagcagatgtgattccaccatcaactgaaagattatgagcagttacaaatccagattcatcactagccaaaaacagagcagcctgtgcgacatcatca |
117 |
Q |
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| T |
30371234 |
attagcagatgtgattccaccatcaactgaaagattatgagcagttacaaatccagattcatcactagccaaaaacagagcagcctgtgcgacatcatca |
30371135 |
T |
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| Q |
118 |
gttgttgcacctctccctttaagcaaacttgcattcatcccaataaactcactcaattgttcactagtcatatcaacttcaccataacatctaaaagcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30371134 |
gttgttgcacctctccctttaagcaaacttgcattcatcccaataaactcactcaattgttcactagtcatatcaacttcaccataacatctaaaagcat |
30371035 |
T |
|
| Q |
218 |
tcaaaagcatcttagaaggaacgccgtgcggagaaacacaattaacgcgaatcaaatgaacacctaattcgcacgctgcacttctcattaatccatccat |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30371034 |
tcaaaagcatctcagaaggaacgccgtgcggagaaacacaattaacgcgaatcaaatgaacacctaattcgcacgccgcacttctcattaatccatccat |
30370935 |
T |
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| Q |
318 |
agctgattttgacattgtatagccatgtgaagcaaatccacctatagttgcagctgcacttgaagtacaaataattgatcctccttttttacctttg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30370934 |
agctgattttgacattgtatagccatgtgaagcaaatccacctatagttgcagctgcacttgaagtacaaataattgatcctccttttttacctttg |
30370838 |
T |
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