View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4663_low_5 (Length: 239)
Name: NF4663_low_5
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4663_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27025569 - 27025791
Alignment:
| Q |
1 |
attacaatatcagatatctgtatacttggaagtttcaaccaccacatcacaagctaagctataaaagaggcatcatctcttggtttttgaaatatattca |
100 |
Q |
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| T |
27025569 |
attacaatatcagatatctgtatacttggaagtttcaaccaccacatcacaagctaagctataaaagaggcatcatctcttggtttttgaaatatattca |
27025668 |
T |
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| Q |
101 |
aataacagcaaccccagctgaagtagaatttgaatgaagcacatcctggccagaaactttggtcttctgaagatcaagagcctgcatagcagatgaaatt |
200 |
Q |
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| T |
27025669 |
aatgacagcaaccccagctgaagtagaatttgaatgaagcacatcctggccagaaactttggtcttctgaagatcaagagcctgcatagcagatgaaatt |
27025768 |
T |
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| Q |
201 |
ccagattttccttgcatctcctg |
223 |
Q |
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| T |
27025769 |
ccagattttccttgcgtctcctg |
27025791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 27056450 - 27056571
Alignment:
| Q |
75 |
atctcttggtttttgaaatatattcaaataacagcaaccccagctgaagtagaatttgaatgaagcacatcctggccagaaactttggtcttctgaagat |
174 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |
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| T |
27056450 |
atctctaggtttttgaaatatattcaaatgacagcaaccccagctgaagtagaatttgaatgaagcacgtcctggccaga-------------tgaaaat |
27056536 |
T |
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| Q |
175 |
caagagcctgcatagcagatgaaattccagatttt |
209 |
Q |
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| T |
27056537 |
ccagagcctgcatagcagatgaaattccagatttt |
27056571 |
T |
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