View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4663_low_6 (Length: 230)
Name: NF4663_low_6
Description: NF4663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4663_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 2964182 - 2964377
Alignment:
| Q |
18 |
tcaataaatttaccatctgtgagttgcatcaacagtgagttgcatctcacaatctaatatcatcaatatcattaactgggttaacctgcacaatcacaca |
117 |
Q |
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| T |
2964182 |
tcaataaatttaccatctgtgagttgcatcaatagtgagttgcatctcacaatctaatatcatcaatatcattaactgggttaacctgcacaatcacaca |
2964281 |
T |
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| Q |
118 |
aagataatgcaagtattataacctcaaaagaaagcttgtttaaagtatatgtgtgtgtaaagaataagtgcatgtttcacagctcagaagattttc |
213 |
Q |
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| T |
2964282 |
aagataatgcaagtattataacctcaaaagaaagcttgtttaaagtatatgtgtgtgtaaagaataagtgcatgtttcacagctcagaagattttc |
2964377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 2919803 - 2919884
Alignment:
| Q |
59 |
gcatctcacaatctaatatc--atcaatatcattaactgggttaacctgcacaatcacacaaagataatgcaagtattataa |
138 |
Q |
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|||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
2919803 |
gcatctcacaatctaatatcttatcaatatcattaagtgggctaacctgcacagtcacacaaagagaatgcaagtattataa |
2919884 |
T |
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