View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664-Insertion-1 (Length: 1075)
Name: NF4664-Insertion-1
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 7 - 590
Target Start/End: Original strand, 40313099 - 40313682
Alignment:
| Q |
7 |
atttggcacggaggaatgatgatgatgatgaatgttgaagcaagatatggaagagaaatcaatcacaaaaaacagagaaattgaagcaattcaaccacaa |
106 |
Q |
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| T |
40313099 |
atttggcacggaggaatgatgatgatgatgaatgttgaagcaagatatggaagagaaatcaatcacaaagaacagagaaattgaagcaattcaaccacaa |
40313198 |
T |
|
| Q |
107 |
aatctatcataattgatgaaaaaggagagaatcttgacaagaatcaagatcaaagaaccaaaacgtaatgaaaattgatgaagatcaacgagaatgatga |
206 |
Q |
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| T |
40313199 |
aatctatgataattgatgaaaaatgagagaatcttgacaagaatcaagatcaaagaagcaaaacgtaatgaaaattgatgaagatcaacgagaatgatga |
40313298 |
T |
|
| Q |
207 |
acgataagtgaacttgaaaaacagttatggatcgtaactttctctctct----gaagaagagggaaaatatgaatatcatatttatagtagtaagccaca |
302 |
Q |
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| T |
40313299 |
acgataagtgaacttgaaaaacagttatggatcgtaactctctctctctctctgaagaagagggaaaatatga-tatcata---atagtagtaagccaca |
40313394 |
T |
|
| Q |
303 |
tgataactatggtgaggcatcaaccatagaatacaaagaacaaactaacttgataacttgttacacaagttatctctataaactaagctaagtaggtgca |
402 |
Q |
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| T |
40313395 |
tgataactatggtgaggcatcaaccatagaatgcaaagaacaaagtaacttgataacttgttacacaagttatctctataaactaagctaagtaggtgca |
40313494 |
T |
|
| Q |
403 |
ttctcctcatggtggaatgaagttataatcttgctcatcatgtcttgaatcttatcataaattataatcttgttgataaagctaatagtgtggtttttaa |
502 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40313495 |
ttctcctcatggtggaatgaagttataatcttgctctccatgtcttgaatcttatcataaattataatcttgttgataaagctaatagtgtggtttttaa |
40313594 |
T |
|
| Q |
503 |
gcaacgttgtgggatgactctaagtgggtcgaagcctccatctaatggatgggtcaagttaaacgctgatggtacttgtagagataat |
590 |
Q |
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| T |
40313595 |
gcaacgttgtgggatgactctaagtgggtcgaagcctccatctaatggatgggtcaagttaaacgctgatggtacttgtagagataat |
40313682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 592 - 710
Target Start/End: Original strand, 40313723 - 40313841
Alignment:
| Q |
592 |
gcgtgtggttgggcagatttgctaaacgcattggaaagtgtagtgcgtatatggtagagctatgggagcgtataaagggttgagttatgctagaaacttg |
691 |
Q |
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| T |
40313723 |
gcgtgtggttgggcagatttgctaaacgcattggaaagtgtagtgcgtatatggtagagctctgggagcgtataaagggtttagttatgctagaaacttg |
40313822 |
T |
|
| Q |
692 |
aggtttcgagttgtagagg |
710 |
Q |
| |
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|||||||||||||||||| |
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| T |
40313823 |
gggtttcgagttgtagagg |
40313841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 710 - 829
Target Start/End: Original strand, 40321602 - 40321719
Alignment:
| Q |
710 |
gatgatagtcatatggataaagccttggttgcgaaaattcagattcttttagcaatggattgagaagttgttgtgaggaatattcttataggaaagcata |
809 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40321602 |
gatgatagtcatatggataaagccttggttgcgaaaattcagattcttttagcaatggattgagaagttgttgtgagga--attcttataggaaagcata |
40321699 |
T |
|
| Q |
810 |
tcaatgcgcaaatattttag |
829 |
Q |
| |
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||||||||||||||| |||| |
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| T |
40321700 |
tcaatgcgcaaatatgttag |
40321719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 905 - 1072
Target Start/End: Original strand, 40321889 - 40322056
Alignment:
| Q |
905 |
caaacttaatccttgatttgcattaaataaaaatgaacagtataatggtgtcacaccactgtcgctaggtgtc-aaaggcaaaggt--gtagagccattg |
1001 |
Q |
| |
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|||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||| |||| |||||||||||| |||||||||||| |
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| T |
40321889 |
caaatttaatccttgacttgcattaaataaaa-tgaacagtataatggtgtcacac-actgtcactag-tgtccaaaggcaaaggttggtagagccattg |
40321985 |
T |
|
| Q |
1002 |
ctttctgctttgactgattcttactggcgtgtt-gcatatttgcgcgttgacatactactgctttgttggca |
1072 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40321986 |
ctttctgctttgactgattcttact-gcgtgttggcatatttgcgcgttgacatactactgctttgttggca |
40322056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 825 - 890
Target Start/End: Original strand, 40321773 - 40321839
Alignment:
| Q |
825 |
tttagact-aaattacatatttcatactttaatttaatttcaggtaatactttcattatatatatat |
890 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40321773 |
tttagactcaaattacatatttcatacttaaatttaatttcaggtaatactttcattatatatatat |
40321839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 736349 - 736414
Alignment:
| Q |
345 |
aactaacttgataacttgttacacaagttatctctataaactaagctaagtaggtgcattctcctc |
410 |
Q |
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| T |
736349 |
aactaactcgataacttattatacaagttatctccgtaaactaagctaagtagttgcattctcctc |
736414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 38644555 - 38644592
Alignment:
| Q |
345 |
aactaacttgataacttgttacacaagttatctctata |
382 |
Q |
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|||||| | ||||||||||||||||||||||||||||| |
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| T |
38644555 |
aactaattggataacttgttacacaagttatctctata |
38644592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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