View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4664-Insertion-10 (Length: 344)

Name: NF4664-Insertion-10
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4664-Insertion-10
NF4664-Insertion-10
[»] chr7 (5 HSPs)
chr7 (8-344)||(5086081-5086417)
chr7 (19-166)||(5609765-5609912)
chr7 (241-344)||(5609987-5610090)
chr7 (31-91)||(21824116-21824176)
chr7 (31-84)||(33972830-33972883)
[»] chr1 (6 HSPs)
chr1 (8-344)||(25595070-25595406)
chr1 (12-168)||(38532954-38533110)
chr1 (241-344)||(38533183-38533286)
chr1 (241-319)||(11644322-11644400)
chr1 (19-53)||(27527067-27527101)
chr1 (111-143)||(27877390-27877422)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-344)||(234969-235294)
[»] chr4 (4 HSPs)
chr4 (12-168)||(15065567-15065723)
chr4 (241-342)||(15065393-15065494)
chr4 (19-160)||(17459070-17459211)
chr4 (272-344)||(17458886-17458958)
[»] chr3 (3 HSPs)
chr3 (29-168)||(2652042-2652181)
chr3 (31-160)||(14504387-14504516)
chr3 (241-283)||(2652254-2652296)
[»] chr2 (2 HSPs)
chr2 (12-133)||(34071612-34071734)
chr2 (31-91)||(21085265-21085325)
[»] chr5 (1 HSPs)
chr5 (31-91)||(11619439-11619499)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 5086417 - 5086081
Alignment:
8 aatggaacaggctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgttt 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
5086417 aatggaacaggctggagagaagaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaaaacctacttggttagagttgttt 5086318  T
108 gggaaggatgcatcaacattgcatttgtatctgccaacactcggtttcctccaacgaacatgcctgttttgatcatgttgtgaaatgttcaccgtaggag 207  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||| ||| | |||| | ||||||    
5086317 gggaaggatgcatcaacattacatttatatctgccaacactcggtttctgtcaacgaacatgcctgttttgaacatgttgcgaagtattcaacataggag 5086218  T
208 ttgcattgccatgccttatcggatgattattttgattagcactacgccagccttccaaaagatattttgctctttccagaatggtgaaattcgagtctga 307  Q
    |||  || ||  ||||||  ||||| || || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
5086217 ttgagttaccgcgccttaaaggatggttgttatgattagcactacgccagccttccaaaagatgttttgctctttccagaatggtgaaattcgagtctga 5086118  T
308 cacctgttgccaaagcttcatgttcttggctttccat 344  Q
    ||||||||||||||||||||||||| |||||||||||    
5086117 cacctgttgccaaagcttcatgttcctggctttccat 5086081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 5609765 - 5609912
Alignment:
19 ctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgtttgggaaggatgc 118  Q
    ||||||||||| |||| |||||||| ||||||||||||||||  ||||| || |||| ||||||||  ||||||| |||  |||| ||||| || |||||    
5609765 ctggagagaaacacatagttttagagcggacatgattcccatttgaatctcggatgcccattccaaaacctactttgtttaagttatttggaaatgatgc 5609864  T
119 atcaacattgcatttgtatctgccaacactcggtttcctccaacgaac 166  Q
    ||||||||||||||| ||||| |||  ||||| ||||||||| |||||    
5609865 atcaacattgcatttatatctaccagtactcgatttcctccatcgaac 5609912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 5609987 - 5610090
Alignment:
241 gattagcactacgccagccttccaaaagatattttgctctttccagaatggtgaaattcgagtctgacacctgttgccaaagcttcatgttcttggcttt 340  Q
    |||||||||| | ||| ||||| |  |||| ||||||||||| ||||||||||||| | || |||||||| ||||||||||| |||| |||| | |||||    
5609987 gattagcacttctccaaccttctagtagatgttttgctcttttcagaatggtgaaagttgaatctgacacttgttgccaaagtttcaggttcctagcttt 5610086  T
341 ccat 344  Q
    ||||    
5610087 ccat 5610090  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 21824176 - 21824116
Alignment:
31 acatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctac 91  Q
    ||||| ||||||| |||||||| |||||||| ||||| |||||||||||||||| ||||||    
21824176 acatgattttagagcggacatggttcccatccgaatctcgaatgcacattccaaatcctac 21824116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 33972883 - 33972830
Alignment:
31 acatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaa 84  Q
    ||||||||||||| |||||||| |||||||| ||||| || |||||||||||||    
33972883 acatggttttagagcggacatggttcccatccgaatctcggatgcacattccaa 33972830  T

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Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 25595070 - 25595406
Alignment:
8 aatggaacaggctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgttt 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
25595070 aatggaacaggctggagagaaaatcatggttttagaccggacatgattcccatcggaatcacgaatgcacattccaaaacctacttggttggagttgttt 25595169  T
108 gggaaggatgcatcaacattgcatttgtatctgccaacactcggtttcctccaacgaacatgcctgttttgatcatgttgtgaaatgttcaccgtaggag 207  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||  ||| |||||| | |||| ||| | ||    
25595170 gggaaggatgcatcaacattacatttatacctgccaacactcggtttcctccaacgaacatgcctgtcttgaatatgctgtgaattattcaacgtggaag 25595269  T
208 ttgcattgccatgccttatcggatgattattttgattagcactacgccagccttccaaaagatattttgctctttccagaatggtgaaattcgagtctga 307  Q
     ||  || || ||||| |  ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
25595270 ctgagttaccgtgcctcaaaggatgtttattatgattagcactacgccagccttccaaaagatgttttgctctttccagaatggtgaaattcgagtctga 25595369  T
308 cacctgttgccaaagcttcatgttcttggctttccat 344  Q
    ||||||||||||||||||||||||| |||||||||||    
25595370 cacctgttgccaaagcttcatgttcctggctttccat 25595406  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 38532954 - 38533110
Alignment:
12 gaacaggctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgtttggga 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||| ||| ||||||||||||||| |    
38532954 gaacagactggagagaaaaacatggttttagaccggacatgattcccatcagaatcacggatgcacatcccaaaacctgctttgttggagttgtttggaa 38533053  T
112 aggatgcatcaacattgcatttgtatctgccaacactcggtttcctccaacgaacat 168  Q
    |||||||||||||||||||||| |||||||||| |||  | |||||||| |||||||    
38533054 aggatgcatcaacattgcatttatatctgccaatactgagcttcctccatcgaacat 38533110  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 38533183 - 38533286
Alignment:
241 gattagcactacgccagccttccaaaagatattttgctctttccagaatggtgaaattcgagtctgacacctgttgccaaagcttcatgttcttggcttt 340  Q
    |||||||||| ||||||||||| | ||||| ||||||||||| || |||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||    
38533183 gattagcacttcgccagccttctagaagatgttttgctcttttcaaaatggtgaaagtcgagtccgacacttgttgccaaagcttcatgttcctggcttt 38533282  T
341 ccat 344  Q
    ||||    
38533283 ccat 38533286  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 11644400 - 11644322
Alignment:
241 gattagcactacgccagccttccaaaagatattttgctctttccagaatggtgaaattcgagtctgacacctgttgcca 319  Q
    |||||||| | | ||||||||| | ||| | ||||||||||||||| || |||| | ||||||||||||||||||||||    
11644400 gattagcatttctccagccttctagaaggtgttttgctctttccaggattgtgacagtcgagtctgacacctgttgcca 11644322  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 27527101 - 27527067
Alignment:
19 ctggagagaaaaacatggttttagaccggacatga 53  Q
    |||||||||||||||||||||||||||||||||||    
27527101 ctggagagaaaaacatggttttagaccggacatga 27527067  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 27877422 - 27877390
Alignment:
111 aaggatgcatcaacattgcatttgtatctgcca 143  Q
    ||||||||||||| |||||||||||||||||||    
27877422 aaggatgcatcaatattgcatttgtatctgcca 27877390  T

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Target: scaffold0007 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 234969 - 235294
Alignment:
19 ctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgtttgggaaggatgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||  ||||||| ||||||||||||||| ||||||||    
234969 ctggagagaaaaacatggttttagaccggacatgattcccatcagaatctcggatgcacatcccaaaacctactttgttggagttgtttggaaaggatgc 235068  T
119 atcaacattgcatttgtatctgccaacactcggtttcctccaacgaacatgcctgttttgatcatgttgtgaaatgttcaccgtaggagttgcattgcca 218  Q
    ||||||||||||||| |||||||||| |||||| |||||||||||||||| | |||   ||| ||| || | |   ||||  || | |  || |||| |     
235069 atcaacattgcatttatatctgccaatactcggcttcctccaacgaacattcgtgtcccgattatgctgaggagcattcaaagtggaaactgaattgtcg 235168  T
219 tgccttatcggatgattattttgattagcactacgccagccttccaaaagatattttgctctttccagaatggtgaaattcgagtctgacacctgttgcc 318  Q
    |||||||   || | |||||  |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||    
235169 tgccttaaaagaggtttattgcgattagcacttcgccagccttccagaagatgttttgctctttccagaatggtgaaagtcgagtctgacacttgttgcc 235268  T
319 aaagcttcatgttcttggctttccat 344  Q
    |||||||||||||| |||||||||||    
235269 aaagcttcatgttcctggctttccat 235294  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 15065723 - 15065567
Alignment:
12 gaacaggctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgtttggga 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||  ||||||| ||||||||||||||| |    
15065723 gaacagcctggagagaaaaacatggttttagaccggacatgattcccatcagaatctcggatgcacatcccaaaccctactttgttggagttgtttggaa 15065624  T
112 aggatgcatcaacattgcatttgtatctgccaacactcggtttcctccaacgaacat 168  Q
    |||||||||||||||||||||| |||||| ||| |||||| |||||||| |||||||    
15065623 aggatgcatcaacattgcatttatatctgtcaatactcggcttcctccatcgaacat 15065567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 15065494 - 15065393
Alignment:
241 gattagcactacgccagccttccaaaagatattttgctctttccagaatggtgaaattcgagtctgacacctgttgccaaagcttcatgttcttggcttt 340  Q
    |||||||||| ||||||||||| | ||||| |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||    
15065494 gattagcacttcgccagccttctagaagatgttttgctctttccaaaatggtgaaagtcgagtctgacacttgttgccaaagcttcatattcctggcttt 15065395  T
341 cc 342  Q
    ||    
15065394 cc 15065393  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 17459211 - 17459070
Alignment:
19 ctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgtttgggaaggatgc 118  Q
    |||||||||||  |||  ||||||| || |||||||||||||| |  || || || ||||||||||| ||||||| ||| || || ||||| ||||||||    
17459211 ctggagagaaactcataattttagagcgtacatgattcccatctgggtctcggatacacattccaagccctactttgtttgaattatttggaaaggatgc 17459112  T
119 atcaacattgcatttgtatctgccaacactcggtttcctcca 160  Q
    ||||||||| || || ||||| |||||||||||||| |||||    
17459111 atcaacattacacttatatcttccaacactcggtttactcca 17459070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 17458958 - 17458886
Alignment:
272 ttttgctctttccagaatggtgaaattcgagtctgacacctgttgccaaagcttcatgttcttggctttccat 344  Q
    |||||||||||||||||| |||||  | ||||||||||| |||||||| || ||||  ||| | |||||||||    
17458958 ttttgctctttccagaattgtgaaggttgagtctgacacttgttgccatagtttcaaattcctcgctttccat 17458886  T

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Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 2652042 - 2652181
Alignment:
29 aaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgtttgggaaggatgcatcaacattg 128  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||  |||||||  |||||||||||||| ||||||||||||||||||    
2652042 aaacatggttttagaccggacatgattcccatcagaatctcggatgcacatcccaaaacctactttattggagttgtttggaaaggatgcatcaacattg 2652141  T
129 catttgtatctgccaacactcggtttcctccaacgaacat 168  Q
    ||||| |||||||||| |||||| ||||||||||||||||    
2652142 catttatatctgccaatactcggcttcctccaacgaacat 2652181  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 14504387 - 14504516
Alignment:
31 acatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctacttggttggagttgtttgggaaggatgcatcaacattgca 130  Q
    |||| |||||||| ||||||||||||||||| || || || || ||||||||||  || |||| ||| ||||| ||||| ||||||||||||||||||||    
14504387 acatagttttagagcggacatgattcccatctgagtctcggatacacattccaaaacccactttgtttgagttatttggaaaggatgcatcaacattgca 14504486  T
131 tttgtatctgccaacactcggtttcctcca 160  Q
    ||| ||||| ||||| ||||||||||||||    
14504487 tttatatctaccaacgctcggtttcctcca 14504516  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 2652254 - 2652296
Alignment:
241 gattagcactacgccagccttccaaaagatattttgctctttc 283  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
2652254 gattagcactacgccagccttccagaagatgttttgctctttc 2652296  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 34071612 - 34071734
Alignment:
12 gaacaggctggagagaaaaacatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcct-acttggttggagttgtttggg 110  Q
    ||||||| |||||||||||||||  ||||||| | |||||| |||||||| || || || ||||| |||||||  ||| | ||| || | || ||||||     
34071612 gaacaggttggagagaaaaacataattttagagcagacatggttcccatctgagtctcggatgcatattccaaaacctaatttgttttgtgtggtttgga 34071711  T
111 aaggatgcatcaacattgcattt 133  Q
    |||||| |||||||||| |||||    
34071712 aaggatacatcaacattacattt 34071734  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 21085265 - 21085325
Alignment:
31 acatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctac 91  Q
    |||| |||||||| || | ||||||||||||||| || ||||||||||| ||||| |||||    
21085265 acatagttttagaacgaaaatgattcccatcagagtctcgaatgcacataccaagacctac 21085325  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 11619439 - 11619499
Alignment:
31 acatggttttagaccggacatgattcccatcagaatcacgaatgcacattccaagtcctac 91  Q
    |||| |||||||| | ||||||||||||||| || || || ||||||||||||| ||||||    
11619439 acattgttttagagcagacatgattcccatctgagtctcggatgcacattccaaatcctac 11619499  T

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