View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4664-Insertion-12 (Length: 142)

Name: NF4664-Insertion-12
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4664-Insertion-12
NF4664-Insertion-12
[»] chr5 (5 HSPs)
chr5 (96-142)||(33800382-33800428)
chr5 (7-48)||(33729347-33729388)
chr5 (7-48)||(33800464-33800505)
chr5 (96-134)||(33729255-33729293)
chr5 (96-137)||(6128465-6128506)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 3e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 33800428 - 33800382
Alignment:
Q  96 taattgtttactttacatgttgcctcaaaacttatttttgttatgag 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33800428 taattgtttactttacatgttgcctcaaaacttatttttgttatgag 33800382  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 33729388 - 33729347
Alignment:
Q  7 agaatgtttgtccaatctgtaagaagactgctctgaacattt 48  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  33729388 agaatgtttgtccaatctgtaagaagactgatctgaacattt 33729347  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 33800505 - 33800464
Alignment:
Q  7 agaatgtttgtccaatctgtaagaagactgctctgaacattt 48  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  33800505 agaatgtttgtccaatctgtaagaacactgctctgaacattt 33800464  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 33729293 - 33729255
Alignment:
Q  96 taattgtttactttacatgttgcctcaaaacttattttt 134  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  33729293 taattgtttactttacatgttgccttaaaacttactttt 33729255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 6128465 - 6128506
Alignment:
Q  96 taattgtttactttacatgttgcctcaaaacttatttttgtt 137  Q
    |||||||||  ||||||||||||||||||||||| |||||||    
T  6128465 taattgtttgttttacatgttgcctcaaaacttacttttgtt 6128506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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