View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4664-Insertion-2 (Length: 1040)
Name: NF4664-Insertion-2
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664-Insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 358 - 685
Target Start/End: Original strand, 37973445 - 37973771
Alignment:
| Q |
358 |
gttgactacccgccggttaaaattcatcgacagttaactgccgattattttaatattttaacggtttttctcaacatcctttgatacgggaacaacgtta |
457 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||| |
|
|
| T |
37973445 |
gttgactacc-gtcggttaaaattcatcgacagttaactgccgattattttgatattttaacggtttttcccaacatcctttgatatgggaacaacatta |
37973543 |
T |
|
| Q |
458 |
ccctaagattgagtttagtaatcaaaagcatcgaatgtatctttaaaaagtccgaactaatttcaatctatattcccttgatgcttatgaacaacacttt |
557 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37973544 |
ccctaagattgaatttagtaatcaaaagcatggaatgtatctttaaaaagtccaaactaatttcaatctatattcccttgatgcttatgaacaacacttt |
37973643 |
T |
|
| Q |
558 |
agtttctgaccaaaaatacacttaccttttctattttattgaatacaagatttagtattctttaacagttaacacttttgaaatattcataacatatcag |
657 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37973644 |
agtttctgaccaaaaatacacttactttttctattttattgaatacaagatttagtattctttaacagttaacacttttgaaatattcagaacatatcag |
37973743 |
T |
|
| Q |
658 |
tcatgtgaaagtattgttaaatatttaa |
685 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37973744 |
tcatgtgaaagtattgttaaatatttaa |
37973771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 37972939 - 37973234
Alignment:
| Q |
14 |
ttatcaacatttgcatgtccatttttgtatggttatgtgtaaattgttgatttgaaataacgaaacacgcacgattgaagatatataaaaattagaaaag |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37972939 |
ttatcaacatttgcatgtccacttttgtatggttatgtgtaaattgttgatttgaaataaagaaacacgcacgattgaagatatataaaaattagaaaag |
37973038 |
T |
|
| Q |
114 |
agtgattatgaaaatgtggaaatatgtatatgagaaactgagaaagtacacttatcatctaccattcagattaaatgaattgttgtttaaagagtgtcaa |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37973039 |
agtaattatgaaaatgtggaaatatgtatatgagaaactgaaaacgtacacttatcatctaccattcagattaaatgaattgttgtttaaagagtgtcaa |
37973138 |
T |
|
| Q |
214 |
cgtagtgataacacattgaatttgttattttatggacatgacatcatagttcaaatctcatatggacaattgtcaaataataatttgtgacattgt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37973139 |
cgtagtgataacacattgaatttgttattttatggacatgacatcatagttcaaatctcgtatggacaattgttaaataataatttgtgacattgt |
37973234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 778 - 1036
Target Start/End: Original strand, 37973780 - 37974036
Alignment:
| Q |
778 |
gattgaaagttgatgaacacgtatccatgtatgatacgaaaatgaatcggggaaaaagtaaaatgttctgaaacacatgatacaagacattgttagtaca |
877 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37973780 |
gattgaaagttgatgaacacgtatccatgtatgatacgaaaatgaatcggggaaaaagtaaaatgttctcaaacacatgatacaagacattgttagtaca |
37973879 |
T |
|
| Q |
878 |
ttaccctgtggcacatttctcatcactcctctaactctt-caatatttccacttctcga-ttcagatcatgaacaagcataattgctctgatc-atgagt |
974 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
37973880 |
ttaccctgtggcacattctccatcactcctctaactcttccaatatttccac-tctcgatttcagatcatgaacaagcataactgctctgatcaatgagt |
37973978 |
T |
|
| Q |
975 |
agctaaagcttatagtgagtagtattgaggttgtgactcatcaaaccagaacatcattattt |
1036 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||| ||||||| |||||||||||||||| |
|
|
| T |
37973979 |
agctaa--cctatagtgagtagtattga-gttgtgacccatcaaa-cagaacatcattattt |
37974036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 37972816 - 37972867
Alignment:
| Q |
7 |
agctattttatcaacatttgcatgtccatttttgtatggttatgtgtaaatt |
58 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
37972816 |
agctatcttatcaacatttgcatgtccacttttgtttggttatgcgtaaatt |
37972867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 1063091 - 1063040
Alignment:
| Q |
402 |
ttattttaatattttaacggtttttctcaacatcctttgatacgggaacaac |
453 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
1063091 |
ttattttagtattttaacggtgtttctcaacatcctttaatgtgggaacaac |
1063040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 402
Target Start/End: Complemental strand, 39028202 - 39028167
Alignment:
| Q |
367 |
ccgccggttaaaattcatcgacagttaactgccgat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39028202 |
ccgccggttaaaattcatcgacagttaattgccgat |
39028167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University