View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664-Insertion-3 (Length: 935)
Name: NF4664-Insertion-3
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 1e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 66 - 303
Target Start/End: Original strand, 10616485 - 10616722
Alignment:
| Q |
66 |
gtgttttgttggtgagaaataggcgagagagaaatagagtagagagaataaggggagaagtttggtctttctcttgcatggtacaacagagaaatagggg |
165 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| || |||||||| | || |
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| T |
10616485 |
gtgtttggttggtgagaaataggagagagagaaatagagtagagagaataagaggagaagtttggtctttcttttgtttggtgcagcagagaaacacagg |
10616584 |
T |
|
| Q |
166 |
cgacagataaaaaagtcatgggccccacctctttttgtttcttcgctgatctgagacgaaagaggcgagagaagcaatctttgtgtgttattcccacctt |
265 |
Q |
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||||||| |||||| |||||| ||||||||||||||||||||||||| | ||||| |||||||| |||||||||||| | ||||||||||| ||||||| |
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| T |
10616585 |
agacagattaaaaagccatgggtcccacctctttttgtttcttcgctggtttgagaagaaagaggggagagaagcaatatatgtgtgttattaccacctt |
10616684 |
T |
|
| Q |
266 |
acccttgtcttctacctagtttctatcacaccatcatg |
303 |
Q |
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| T |
10616685 |
actcttgtcttttacctagtttctatcacaccctcatg |
10616722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 66 - 297
Target Start/End: Original strand, 29732467 - 29732698
Alignment:
| Q |
66 |
gtgttttgttggtgagaaataggcgagagagaaatagagtagagagaataaggggagaagtttggtctttctcttgcatggtacaacagagaaatagggg |
165 |
Q |
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|||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| || |||||||| | ||| |
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| T |
29732467 |
gtgtttggttggtgaaaaataggagagagagaaatagagtagagagaataagaggagaagtttggtctttcttttgtttggtgcagcagagaaacaaggg |
29732566 |
T |
|
| Q |
166 |
cgacagataaaaaagtcatgggccccacctctttttgtttcttcgctgatctgagacgaaagaggcgagagaagcaatctttgtgtgttattcccacctt |
265 |
Q |
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| T |
29732567 |
agacagattaaaaagccatgggtcccacctctttttgtttcttcactggtttgagaagaaagaggggagagaagcaatatatgtgtgttattaccacctt |
29732666 |
T |
|
| Q |
266 |
acccttgtcttctacctagtttctatcacacc |
297 |
Q |
| |
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| T |
29732667 |
gcccttgtcttttatctagtttctatcacacc |
29732698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 10616868 - 10616965
Alignment:
| Q |
478 |
ataaagaaccaggagctaaacgattagaaatggtacat----------gttttacaattcatatgcaaattaaaaatggtagttttaatttataaaat |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||| |
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| T |
10616868 |
ataaagaaccaggagctaaacgattagaaatggtacatgttggtgttggttttacaattcatatgtaaattaaaaatgctggttttaatttataaaat |
10616965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 36183256 - 36183354
Alignment:
| Q |
81 |
gaaataggcgagagagaaatagagtagagagaataaggggagaagtttggtctttctcttgcatggtacaacagagaaataggggcgacagataaaaaa |
179 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||| | |||| || ||||||| || ||||||||||||||| |
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| T |
36183256 |
gaaataggcaagagagaaatagagtagagagaataagaggagaagtgtactctttctctcgtttggtgcagaagagaaactggtgcgacagataaaaaa |
36183354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 478 - 532
Target Start/End: Original strand, 29732863 - 29732921
Alignment:
| Q |
478 |
ataaagaaccaggagctaaacgattagaaatggtacat----gttttacaattcatatg |
532 |
Q |
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| T |
29732863 |
ataaagaaccaggagctaaatgattagaaatggtacatgttggttttacaattcatatg |
29732921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 3e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 66 - 303
Target Start/End: Complemental strand, 34412184 - 34411947
Alignment:
| Q |
66 |
gtgttttgttggtgagaaataggcgagagagaaatagagtagagagaataaggggagaagtttggtctttctcttgcatggtacaacagagaaatagggg |
165 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| | || || |||||||| | ||| |
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| T |
34412184 |
gtgtttggttggtgagaaataggagagagagaaatagagtagagagaataagatgagaagtttggtctttcttttgttttgtgcagcagagaaacacggg |
34412085 |
T |
|
| Q |
166 |
cgacagataaaaaagtcatgggccccacctctttttgtttcttcgctgatctgagacgaaagaggcgagagaagcaatctttgtgtgttattcccacctt |
265 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||||||||||| | ||||| |||||||| |||||||||||| | ||||||||||| ||||||| |
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| T |
34412084 |
agacagattaaaaagccatgggtcccacctctttttgtttcttcgctggtttgagaagaaagaggggagagaagcaatatatgtgtgttattaccacctt |
34411985 |
T |
|
| Q |
266 |
acccttgtcttctacctagtttctatcacaccatcatg |
303 |
Q |
| |
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|| |||||||| |||||||||||||||||||| ||||| |
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| T |
34411984 |
actcttgtcttttacctagtttctatcacaccctcatg |
34411947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 844 - 935
Target Start/End: Complemental strand, 44299060 - 44298969
Alignment:
| Q |
844 |
ctaaattcttactttatactataaataggattcatgggagcaagtaagaacgatgtcacccttgcaaagaaatgagctttatcatttgattt |
935 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44299060 |
ctaagttcttactttatactataaataggaatcatgggagcaagtaagaacgatgtcacccttgcaaagaaatgagctttatcatttgattt |
44298969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 44299110 - 44299057
Alignment:
| Q |
8 |
atattatgtaccgatacttatggagttaggatactcccatcgtagataatctaa |
61 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44299110 |
atattatgtaccgatacttatggagttaggatacttccatcgtagataatctaa |
44299057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 478 - 532
Target Start/End: Complemental strand, 34411800 - 34411742
Alignment:
| Q |
478 |
ataaagaaccaggagctaaacgattagaaatggtacat----gttttacaattcatatg |
532 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
34411800 |
ataaagaaccaggagctaaatgattagaaatggtacatgttggttttacaattcatatg |
34411742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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