View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664-Insertion-5 (Length: 673)
Name: NF4664-Insertion-5
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664-Insertion-5 |
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| [»] scaffold0879 (3 HSPs) |
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| [»] scaffold1891 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 669
Target Start/End: Complemental strand, 24422477 - 24421838
Alignment:
| Q |
19 |
aaagataattt-gttttttaaaaagaaatatggttttcttgaacaataaattaaatccaaattacgatcaaatacactacattctcacttaaattacttt |
117 |
Q |
| |
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||||||||||| | ||||| | ||||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
24422477 |
aaagataattttgattttttataagaaatatggttttctggaccaataaattaaatccaaataacgatcaaatacacaacattct--------------- |
24422393 |
T |
|
| Q |
118 |
gaaaattaaaaatgatatgcatcactccatattacatgtatcata-----agcaaaactgtatatgtatttagtccaaatttggattaaatgtactactt |
212 |
Q |
| |
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| |||||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422392 |
gtaaattaaaaatgat--gcatcactccatattacatgtattatattataagcaaatttgtatatgtatttagtccaaatttggattaaatgtactactt |
24422295 |
T |
|
| Q |
213 |
acttcttttacatatattttattccatttgaacatgagagaattatggcaaatttggaattaatttgactttatcataagtttcacacttgggctctcaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24422294 |
acttcttttacatatattttattccatttgaacattagagaattctggcaaatttggaattaatttgactttatcatatgtttcacacttgggctctcaa |
24422195 |
T |
|
| Q |
313 |
tcatgcttgccaattcttctatctaaaagacaaaggatatactaatttgaaatacacctgctttgacgcgttttcacaaatatttgttgttcatatctct |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24422194 |
tcatgcttgccaattcttctatctaaaagacaaaggatatactaatttgaaatacaccttctttgacgcgttttcacaaatatttgttgttcatatctct |
24422095 |
T |
|
| Q |
413 |
caaaaataactcattcagcgttaccttgtattcatcacctacttattccattgaccttgctcatgcttgtttgtggaaaacattaactcattcaattaaa |
512 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24422094 |
caaaaataactcattcagcgttactttgtattcatcacctactcattccattgaccttgctcatgcttgtttatggaaaacattaactcattcaattaaa |
24421995 |
T |
|
| Q |
513 |
aaccacaatgaatcaagttttaatatacaaaatgacatggacaacaaccaaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaact |
612 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24421994 |
aaccacaatgcatcaagttttaatatacaaaatgacatgaacaaaaaccaaaaggtatagaaaacacaccatccacgaaataagaatataatttaaaact |
24421895 |
T |
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| Q |
613 |
ttaagccaggctgtcttaatgcattttagaaattaagaaatcttataattcaagctt |
669 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24421894 |
ttaagccaggctgtcttaatgcatttgagaaattaagaaatcttataattcaagctt |
24421838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 479 - 669
Target Start/End: Original strand, 24469695 - 24469885
Alignment:
| Q |
479 |
ttgtttgtggaaaacattaactcattcaattaaaaaccacaatgaatcaagttttaatatacaaaatgacatggacaacaaccaaaaggtatagaaaaca |
578 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
24469695 |
ttgtttatggaaaacattaactcattcaattaaaaaccacaatgcatcaagttttaatatacaaaatgacatgaacaaaaaccaaaaggtatagaaaaca |
24469794 |
T |
|
| Q |
579 |
caccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataattcaagctt |
669 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24469795 |
caccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttgagaaattaagaaatcttataattcaagctt |
24469885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 125 - 403
Target Start/End: Original strand, 24469394 - 24469668
Alignment:
| Q |
125 |
aaaaatgatatgcatcactccatattacatgtatcataagcaaaactgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttaca |
224 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
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| T |
24469394 |
aaaaataagatgcatcactccatattacatgtatcataagcaaaactgtatatgtatttagtccaaattttgattaaatgcactact----tcttttacg |
24469489 |
T |
|
| Q |
225 |
tatattttattccatttgaacatgagagaattatggcaaatttggaattaatttgactttatcataagtttcacacttgggctctcaatcatgcttgcca |
324 |
Q |
| |
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||||||||||| || |||| ||| ||| |||| || ||| | | ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |
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| T |
24469490 |
tatattttatttcaattgatcattagaaaattctgtaaaaatggaaattaatttgactttatcaaatgtttcacacttgagttctcaatcatgcttgcca |
24469589 |
T |
|
| Q |
325 |
attcttctatctaaaagacaaaggatatactaatttgaaatacacctgctttgacgcgttttcacaaatatttgttgtt |
403 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||| |
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| T |
24469590 |
attcttctctctaaaagccaaaggatatactaatttgaaatacacctgcacgaacgcgttctcacatatttttgttgtt |
24469668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 24469270 - 24469363
Alignment:
| Q |
31 |
ttttttaaaaagaaatatggttttcttgaacaataaattaaatccaaattacgatcaaatacactacattctcacttaaattactttgaaaattaaaaa |
129 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||||| |
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| T |
24469270 |
ttttttataaagaaatatggttttcttgaccaataaattaaatccaaatttcgatcaaataca-----ttcccatttaaattacattgaaaattaaaaa |
24469363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 514 - 661
Target Start/End: Complemental strand, 24478188 - 24478034
Alignment:
| Q |
514 |
accacaatgaatcaagttttaatatacaaaatgacatggacaacaaccaaaaggtatagaaaa--------cacaccatccacgaaataagaatataatt |
605 |
Q |
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|||| |||| |||||||||||| |||||| |||||||| |||| |||||||| |||| |||| ||| |||||||||||||| ||||||||| |
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| T |
24478188 |
accagaatgcatcaagttttaaaatacaatatgacatgaacaaaaaccaaaaaatatacaaaaacagtaaacacgtcatccacgaaataaaaatataatt |
24478089 |
T |
|
| Q |
606 |
taaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataat |
661 |
Q |
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||||||||||||||||||||||||||||| || | ||||||| |||||||||||| |
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|
| T |
24478088 |
caaaactttaagccaggctgtcttaatgcaattgaaaaattaa-aaatcttataat |
24478034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 24406959 - 24406887
Alignment:
| Q |
258 |
tggcaaatttggaattaatttgactttatcataagtttcacacttg-ggctctcaatcatgcttgccaattct |
329 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||| |
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| T |
24406959 |
tggcaagttttgaattaatttgactttatcaattgtttcacacttgatgttctcaatcatgcttgccagttct |
24406887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 479 - 669
Target Start/End: Original strand, 3955 - 4145
Alignment:
| Q |
479 |
ttgtttgtggaaaacattaactcattcaattaaaaaccacaatgaatcaagttttaatatacaaaatgacatggacaacaaccaaaaggtatagaaaaca |
578 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
3955 |
ttgtttatggaaaacattaactcattcaattaaaaaccacaatgcatcaagttttaatatacaaaatgacatgaacaaaaaccaaaaggtatagaaaaca |
4054 |
T |
|
| Q |
579 |
caccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcattttagaaattaagaaatcttataattcaagctt |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4055 |
caccatccacgaaataagaatataatttaaaactttaagccaggctgtcttaatgcatttgagaaattaagaaatcttataattcaagctt |
4145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 134 - 403
Target Start/End: Original strand, 3663 - 3928
Alignment:
| Q |
134 |
atgcatcactccatattacatgtatcataagcaaaactgtatatgtatttagtccaaatttggattaaatgtactacttacttcttttacatatatttta |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||| |
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| T |
3663 |
atgcatcactccatattacatgtatcataagcaaaactgtatatgtatttagtccaaattttgattaaatgcactact----tcttttacgtatatttta |
3758 |
T |
|
| Q |
234 |
ttccatttgaacatgagagaattatggcaaatttggaattaatttgactttatcataagtttcacacttgggctctcaatcatgcttgccaattcttcta |
333 |
Q |
| |
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|| || |||| ||| ||| |||| || ||| | | ||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
3759 |
tttcaattgatcattagaaaattctgtaaaaatggaaattaatttgactttatcaaatgtttcacacttgagttctcaatcatgcttgccaattcttctc |
3858 |
T |
|
| Q |
334 |
tctaaaagacaaaggatatactaatttgaaatacacctgctttgacgcgttttcacaaatatttgttgtt |
403 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| || ||||||||| |
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|
| T |
3859 |
tctaaaagccaaaggatatactaatttgaaatacacctgcacgaacgcgttctcacatatttttgttgtt |
3928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 3533 - 3630
Alignment:
| Q |
31 |
ttttttaaaaagaaatatggttttcttgaacaataaattaaatccaaattacgatcaaatacactacattctcacttaaattactttgaaaattaaaaat |
130 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| || ||||||||| ||||||||||||||| |
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| T |
3533 |
ttttttataaagaaatatggttttcttgaccaataaattaaatccaaatttcgatcaaataca-----ttcccatttaaattacattgaaaattaaaaat |
3627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1891 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1891
Description:
Target: scaffold1891; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 482 - 544
Target Start/End: Complemental strand, 434 - 372
Alignment:
| Q |
482 |
tttgtggaaaacattaactcattcaattaaaaaccacaatgaatcaagttttaatatacaaaa |
544 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
434 |
tttgtggaaaacattaagtcattcaattaaaaaccataatgtatcaagttttaaaatacaaaa |
372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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