View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664-Insertion-6 (Length: 556)
Name: NF4664-Insertion-6
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664-Insertion-6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 6 - 556
Target Start/End: Original strand, 2492349 - 2492899
Alignment:
| Q |
6 |
cataaatttcccatcttgtattatttctaattgttctgatgttaatcagctgagaatccagacaccttttgcagtcctttctactgatatctcttgtgca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2492349 |
cataaatttcccatcttgtattatttctaattgttctgatgttaatcagctgagaatccagacaccttttgcagtcctttctactaatatctcttgtgca |
2492448 |
T |
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| Q |
106 |
ctgagccattccatacctcttctcactttgattgaagttcagtacttctgtgtggaacattaatgatttctctgaagctgtagctgctactccactcatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492449 |
ctgagccattccatacctcttctcactttgattgaagttcagtacttctgtgtggaacattaatgatttctctgaagctgtagctgctactccactcatg |
2492548 |
T |
|
| Q |
206 |
aaaggtaacccttgtgaaaccacagaaggatcatcaatatcatcaaagtcatatgtaaatgtcaattcctgcatgtctccaaagaagctctcgtttgaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492549 |
aaaggtaacccttgtgaaaccacagaaggatcatcaatatcatcaaagtcatatgtaaatgtcaattcctgcatgtctccaaagaagctctcgtttgaat |
2492648 |
T |
|
| Q |
306 |
agcgtaggaaacaccatctaaacaaaacttgaacatctctacacttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492649 |
agcgtaggaaacaccatctaaacaaaacttgaacatctctacacttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaatt |
2492748 |
T |
|
| Q |
406 |
gttagcagatatgtctcctctacataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgttt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492749 |
gttagcagatatgtctcctctacataatattgaaccataaatcctgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgttt |
2492848 |
T |
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| Q |
506 |
gaagcaagagaattcaataaagtttgcaatatgactccattgacagtagta |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492849 |
gaagcaagagaattcaataaagtttgcaatatgactccattgacagtagta |
2492899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 68 - 549
Target Start/End: Original strand, 2489127 - 2489611
Alignment:
| Q |
68 |
caccttttgcagtcctttctactgatatctcttgtgcactgagccattccatacctcttctcactttgattgaagttcagtacttctgtgtggaacatta |
167 |
Q |
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|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | |
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| T |
2489127 |
caccttctgcagtcctgtctattgatatctcttgtgcactgagccattccatacctcttctcactttgattaaagttcagttcttctgtgtggaacatga |
2489226 |
T |
|
| Q |
168 |
atgatttctctgaagctgtagctgctactccactcatgaaaggtaacccttgtgaaaccacagaaggatcatcaatatcatcaaagtcatatgtaaa--- |
264 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||| ||||| | ||||| | ||| ||| || |
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| T |
2489227 |
atgagttctctgaagctgcagctgctactccactcatgaaaggtaaccattgtgataccaaagaagggtcatcga---catcagtgacatttgtgaaagc |
2489323 |
T |
|
| Q |
265 |
---tgtcaattcctgcatgtctccaaagaagctctcgtttgaatagcgtaggaaacaccatctaaacaaaacttgaacatctctacacttaggaaaaaca |
361 |
Q |
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||| | | | ||||||||||||||||| |||||| |||||||||||||||||||| |||||| ||||| |||||| ||| ||||||| || || |
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| T |
2489324 |
atttgttattccatgcatgtctccaaagaaattctcgtccgaatagcgtaggaaacaccaactaaaccaaactgtaacatccctattcttaggacaatca |
2489423 |
T |
|
| Q |
362 |
tttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctcctctacataatattgaaccataaatcctgctgttgtttt |
461 |
Q |
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||||| ||| || |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
2489424 |
tttgacgctactcttgtagagttaaggacacagatagaacaattgttagcagatatgtctcctctacataatattgaaccataaaccctgctggagtttt |
2489523 |
T |
|
| Q |
462 |
ctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaagtttgcaatatgactccattgac |
549 |
Q |
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||||| || |||||||||||||||| |||||||||||||| |||||||||||||||| |||||| || || |||||| || ||||||| |
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| T |
2489524 |
ctcctacagtggtttggtaaaatccttggtgatcaaccacatttgaagcaagagaatccaataaggtatggaatatgtcttcattgac |
2489611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 56 - 530
Target Start/End: Original strand, 2495526 - 2496003
Alignment:
| Q |
56 |
tgagaatccagacaccttttgcagtcctttctactgatatctcttgtgcactgagccattccatacctcttctcactttgattgaagttcagtacttctg |
155 |
Q |
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|||| ||||| ||||||| |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
2495526 |
tgagcatccaaacaccttctgcagtcctttctactgatatctcttgtacactgggtcataccatacctcttctcactttgattaaagttcagtacttctg |
2495625 |
T |
|
| Q |
156 |
tgtggaacattaatgatttctctgaagctgtagctgctactccactcatgaaaggtaacccttgtgaaaccacagaaggatcatcaatatcatcaaagtc |
255 |
Q |
| |
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|||||||||| ||||||||||| ||||||| |||||||||||| |||||||| | ||||||||||||||||| |||||| |||||||| |||| || |
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| T |
2495626 |
tgtggaacatgaatgatttctccgaagctgcagctgctactccgctcatgaaggataacccttgtgaaaccaaagaagggtcatcaat---atcagtttc |
2495722 |
T |
|
| Q |
256 |
atatgtaaatg-----tcaattcc-tgcatgtctccaaagaagctctcgtttgaatagcgtaggaaacaccatctaaacaaaacttgaacatctctacac |
349 |
Q |
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|| ||| | || | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |
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| T |
2495723 |
atttgtgattgccgttgctgttccttgcatgtctccgaagaagctctcgtttgaatagcgtaggaaacaccatctaaaccaaatagtaacatctctactc |
2495822 |
T |
|
| Q |
350 |
ttaggaaaaacatttgaagcttctattgtggagttacggacacaatcagaacaattgttagcagatatgtctcctctacataatattgaaccataaatcc |
449 |
Q |
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|||||| || ||||||| | | || |||| |||||| ||||||||| | ||||||| |||||||||||||| |||||||||||||||| |||||||| || |
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| T |
2495823 |
ttaggacaatcatttgaggatactcttgtagagttaaggacacaattaaaacaattattagcagatatgtcccctctacataatattgtaccataaagcc |
2495922 |
T |
|
| Q |
450 |
tgctgttgttttctcctgcaatggtttggtaaaatccatggtgatcaaccacgtttgaagcaagagaattcaataaagttt |
530 |
Q |
| |
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|| | |||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||| |
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| T |
2495923 |
tgttaggcttttttcctacaatggtttggtaaaatccatggctatcaacgacgtttgaagcaagagaatccaataaggttt |
2496003 |
T |
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