View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664-Insertion-8 (Length: 68)
Name: NF4664-Insertion-8
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664-Insertion-8 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 55; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 39581659 - 39581601
Alignment:
| Q |
10 |
aaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactc |
68 |
Q |
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| T |
39581659 |
aaattccctcttcatcttctcaatcatcatcacacataacagccagcattccttcactc |
39581601 |
T |
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Target: chr1 (Bit Score: 53; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 52143545 - 52143605
Alignment:
| Q |
8 |
ccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactc |
68 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
52143545 |
ccaaattccctcttcatcttctcaatcataatcacacataacaactagcattccttcactc |
52143605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 29183154 - 29183095
Alignment:
| Q |
9 |
caaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactc |
68 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
29183154 |
caaatttcctcttcatcttctcgatcatcatcacacataacaaccataattccttcactc |
29183095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-20
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 31183101 - 31183158
Alignment:
| Q |
11 |
aattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactc |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31183101 |
aattccctcttcatcttctcaatcatcatcacacataacagacagcattccttcactc |
31183158 |
T |
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Target: chr7 (Bit Score: 49; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-20
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 7313901 - 7313841
Alignment:
| Q |
8 |
ccaaattccctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactc |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
7313901 |
ccaaattccctcttcatcttctcaatcatcatcacacataacagtcaacattccttcactc |
7313841 |
T |
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Target: chr2 (Bit Score: 48; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 34387284 - 34387335
Alignment:
| Q |
17 |
ctcttcatcttctcaatcatcatcacacataacaaccagcattccttcactc |
68 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34387284 |
ctcttcatcttctcaatcgtcatcacacataacaaccagcattccttcactc |
34387335 |
T |
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