View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4664-Insertion-9 (Length: 161)
Name: NF4664-Insertion-9
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664-Insertion-9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0384 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 94; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 41074598 - 41074695
Alignment:
| Q |
64 |
tgttgctagactttgagcccatttcattctctcctcaatcatcacgtcgtaaatgggtaactcaattcacctctttttcattttatagaccaattgta |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41074598 |
tgttgctagactttgagcccatttcattctctcctcaatcatcacgtcgtaaatgggtaactcaattcacctctttttcattttataaaccaattgta |
41074695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 6188 - 6141
Alignment:
| Q |
114 |
aaatgggtaactcaattcacctctttttcattttatagaccaattgta |
161 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
6188 |
aaatgggtaactcaaatcacctccttttcattttataaaccaattgta |
6141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 6248 - 6208
Alignment:
| Q |
66 |
ttgctagactttgagcccatttcattctctcctcaatcatc |
106 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
6248 |
ttgctagactttgagcccttttcattttctcctcaatcatc |
6208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University