View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664_low_1 (Length: 654)
Name: NF4664_low_1
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 7 - 636
Target Start/End: Complemental strand, 2492356 - 2491722
Alignment:
| Q |
7 |
aatttatggatccaattgtttcatgtggtatgatgactatcagttttatgctaatgtatcgtttcttccaagtggtgagtcctttgacttttggttagtt |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2492356 |
aatttatggatccaattgtttcatgtggtatgatgactatcagttttatgctagtgtatcctttcttccaagtggtgagtcctttgacttttggttagtt |
2492257 |
T |
|
| Q |
107 |
ctttttaaatataacctatttctcaattataattgtctatcctatcaatttaagattcataag--------ttgtctatcctcaattgaaatatgcactc |
198 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |
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| T |
2492256 |
ctttttaaatataacatatttctcaattataattgtctatcctatcaatttaagattcacaaggacacatgttgtctatcctcaactgaaatatgcactc |
2492157 |
T |
|
| Q |
199 |
ctctcgacttaaatattagcaaaaaatacatgtatctggatcacatttcgacaagttaattacttggggaacaagatacttgtacgttttgcttttattt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492156 |
ctctcgacttaaatattagcaaaaaatacatgtatctggatcacatttcgacaagttaattacttggggaacaagatacttgtacgttttgcttttattt |
2492057 |
T |
|
| Q |
299 |
aagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaatatgtatttttatataggagttaaacgcggaggtttacaagttaagatgt |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492056 |
aagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaatctgta--tttatataggagttaaacgcggaggtttacaagttaagatgt |
2491959 |
T |
|
| Q |
399 |
taacttacatgagaagctattattaaaagacttgaaattactggaagatcattttaacnnnnnnnctaactgtagatgcttgttcaaaagcagctctaag |
498 |
Q |
| |
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| T |
2491958 |
taacttacatgagaagctattattaaaagacttgaaattactggaagatcattttaactttttttctaactgtagatgcttgttgaaaagcagctctaag |
2491859 |
T |
|
| Q |
499 |
atatttttatatggctacacttattttccttgtgatgtctaataaggaagccaagctaatataaatttttctctgtggtacagctgcatggaggccttct |
598 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
2491858 |
atatttttatatggctacacttactttccttgtgatgtctaataaggaagccaagctaatat-aagttttctctgtggtacagctgcatggaggccttct |
2491760 |
T |
|
| Q |
599 |
tcttgcagaagcttagcagcaattgcggtctcagcagc |
636 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
2491759 |
tcttgcagaagcttagcagcgattgcggtctcagcagc |
2491722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 436
Target Start/End: Complemental strand, 2489069 - 2488636
Alignment:
| Q |
7 |
aatttatggatccaattgtttcatgtggtatgatgactatcagttttatgctaatgtatcgtttcttccaagtggtgagtcctttgacttttggttagtt |
106 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |
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| T |
2489069 |
aatttatggacccaattgtttcatgtggtataatgactatcaattttatgctaatgtatccactcttcaaagtggtgagtcctttgacttttgattagtt |
2488970 |
T |
|
| Q |
107 |
ctttttaaatataacctatttctcaattataattgtctatcctatcaatttaagattcataa---------gttgtctatcctcaattgaaatatgcact |
197 |
Q |
| |
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|||||| || ||| |||||| ||| ||||||||| |||||||| | |||| | ||||| | ||||||||||||||| |||||||| |||| |
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| T |
2488969 |
ctttttcaaaatatgctatttatcagttataattgcctatcctaccgatttgacattcaccacgacacagtgttgtctatcctcaactgaaatattcact |
2488870 |
T |
|
| Q |
198 |
cctctcgacttaaatattagc-aaaaaatacatgtatctggatcacatttcgacaagttaattacttggggaacaagatacttgtacgttttgcttttat |
296 |
Q |
| |
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||||||||||||||||| ||| |||||||||| |||||| | || ||| |||||| |||| ||| |||| |||||| ||||| |||||| ||||| |
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| T |
2488869 |
cctctcgacttaaatataagcaaaaaaatacacgtatcttgtccatgtttagacaag----ttacatggtgaaccagatacatgtactttttgcgtttat |
2488774 |
T |
|
| Q |
297 |
ttaagtagagaggagtgtgtctttaacttataagaatgtctttacaggaaaatatgtatttttatataggagttaaacgcggaggtttacaagttaagat |
396 |
Q |
| |
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|||||| ||||||||| ||| ||||||||||||||| |||||| ||| |||| ||| |||||| || || ||| | |||| ||||| || ||| || |
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| T |
2488773 |
ttaagttgagaggagtatgtatttaacttataagaaagtctttgttggagaataagta--tttataaagaagctaaccacggacgtttaggagataaaat |
2488676 |
T |
|
| Q |
397 |
gttaacttacatgagaagctattattaaaagacttgaaat |
436 |
Q |
| |
|
||||||||| || | |||||| | || ||||||||||||| |
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| T |
2488675 |
gttaacttatataacaagctactgtttaaagacttgaaat |
2488636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 2495467 - 2495362
Alignment:
| Q |
20 |
aattgtttcatgtggtatgatgactatcagttttatgctaatgtatcgtttcttccaagtggtgagtcctttgacttttggttagttctttttaaatata |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
2495467 |
aattgtttcatgtggtatgatgactatcagttttattctaatgtctccactcttctaagtggtgagtcctttgacttttggttagttctttttcaattta |
2495368 |
T |
|
| Q |
120 |
acctat |
125 |
Q |
| |
|
| |||| |
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|
| T |
2495367 |
agctat |
2495362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 507 - 614
Target Start/End: Complemental strand, 2495028 - 2494921
Alignment:
| Q |
507 |
atatggctacacttattttccttgtgatgtctaataaggaagccaagctaatataaatttttctctgtggtacagctgcatggaggccttcttcttgcag |
606 |
Q |
| |
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||||||||| ||||| |||||||||||| ||| ||||||||| || ||||||||| |||||| |||||||||||| | ||||||| |||||||||||| |
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| T |
2495028 |
atatggctagacttagtttccttgtgatatcttataaggaagagaatctaatataagcttttctttgtggtacagcttcttggaggctttcttcttgcag |
2494929 |
T |
|
| Q |
607 |
aagcttag |
614 |
Q |
| |
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|||||||| |
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| T |
2494928 |
aagcttag |
2494921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 2495329 - 2495261
Alignment:
| Q |
169 |
gttgtctatcctcaattgaaatatgcactcctctcgacttaaatattagcaaaaaatacatgtatctgg |
237 |
Q |
| |
|
||||| |||| |||| ||||||||| |||||||||||||||| ||| |||| ||| ||||||||||||| |
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| T |
2495329 |
gttgtatatcttcaactgaaatatgtactcctctcgacttaattataagcagaaagtacatgtatctgg |
2495261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 630
Target Start/End: Complemental strand, 2488533 - 2488444
Alignment:
| Q |
538 |
taataaggaagccaagctaatataaatttttctctgtggtacagctgcatggaggccttcttcttgcagaagcttagcagcaattgcggtctc |
630 |
Q |
| |
|
||||||||||| || ||||||||| ||| || |||||||||| ||| |||| |||||||| |||||||||||| |||| |||||||||| |
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| T |
2488533 |
taataaggaagacagtctaatataagatttgctttgtggtacagttgcttggaagccttctt---gcagaagcttagtagcagttgcggtctc |
2488444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 2495150 - 2495102
Alignment:
| Q |
387 |
aagttaagatgttaacttacatgagaagctatt-attaaaagacttgaa |
434 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |||||||||||||| |
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|
| T |
2495150 |
aagttaagatgttaacttatatgacaagctattgtttaaaagacttgaa |
2495102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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