View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664_low_3 (Length: 475)
Name: NF4664_low_3
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 462
Target Start/End: Complemental strand, 26834043 - 26833606
Alignment:
| Q |
20 |
tcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcannnnnnnnnnnnnnnnnnnctttcatttttccaaccatttacctgctttgca |
119 |
Q |
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| T |
26834043 |
tcacaatcacagtgccatagctcttacagaaactgaaacccgcaagcactctctctctctc------ctttcaattttccaaccatttacctgctttgca |
26833950 |
T |
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| Q |
120 |
ttgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgttttgttaatttttctacctc |
219 |
Q |
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| T |
26833949 |
ttgtcattgttctgttctgtctctcttttctttttcattaaggaaccataacatgcttagatcttcaagcatatcaacgttttgttaatttttctacctc |
26833850 |
T |
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| Q |
220 |
ttccacagtttcttttctgcatga-ccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttattcnnnnnnncatttgaa |
318 |
Q |
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| T |
26833849 |
tttcacagtttcttttctgcatgacccctggaaacaaaaacaagtttttctccttttctttaagtaaagttggttaaatttattcaaaaaaacatttgaa |
26833750 |
T |
|
| Q |
319 |
gtnnnnnnntgtatgcttttcaaggagcaaggaatggacttggtttacaactcgagtttcgttggagacaaatcagagagccattgatcgtgccattgct |
418 |
Q |
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| T |
26833749 |
gtaaaaaaatgtatgcttttcaaggagcaaggaatggacttggtttacaacacgagtttctttggagacaaatcagagagccattgatcgtgccattgct |
26833650 |
T |
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| Q |
419 |
gagagttgcagtgtttctttgcctaggcatgtcgttgatgatgt |
462 |
Q |
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| T |
26833649 |
gagagttgcagtgtttgtttgcctaggcatgtcgttgatgatgt |
26833606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 460
Target Start/End: Complemental strand, 26786891 - 26786819
Alignment:
| Q |
388 |
aaatcagagagccattgatcgtgccattgctgagagttgcagtgtttctttgcctaggcatgtcgttgatgat |
460 |
Q |
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|||| ||||| || |||||||||||| ||||||||| |||||||||| | |||||| ||||||| |||||||| |
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| T |
26786891 |
aaataagagaacctttgatcgtgccaatgctgagagctgcagtgtttatctgcctaagcatgtcattgatgat |
26786819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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