View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664_low_5 (Length: 395)
Name: NF4664_low_5
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 49781743 - 49781373
Alignment:
| Q |
18 |
cttccggcattcttccaaactcctcaagagtatcaaagggcatatgttgcaaatggagtaattcagagaggaaaagcaaactgtagcttcttttgtctgt |
117 |
Q |
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| T |
49781743 |
cttccggcattcttccaaactccccaagagtatcaaagggcatatgttgcaaatggagtaattcagagaggaaaagcaaactgtagcttcttttgtctgt |
49781644 |
T |
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| Q |
118 |
cacatattatgtaaatgtgacgtcaacatagaaaacatgtgcagttctcctccctggattagtaac----tatggaatctgatattggaaatttcttttg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49781643 |
cacatattatgtaaatgtgacgtcaacatagaaaacatgtgcagtgctcctccctggattagtaactatatatggaatctgatattggaaatttcttttg |
49781544 |
T |
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| Q |
214 |
atcaaaagtaagatctcatttgacaataacaattaatatgccataagataagaatatgccttaaaataagacacatttgtctctcaagttattatccata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49781543 |
atcaaaagtaagatctcatttgacaataacaattaatatgccataagataagaatatgccttaaaataagacacatttgtctctcaagttattatccata |
49781444 |
T |
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| Q |
314 |
cnnnnnnnntatctgcattccgtgatatgtagtacacaaattaaggaagttctttatactttgcatcttctt |
385 |
Q |
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| T |
49781443 |
c-aaaaaaatatctgcattccgtgatatgtagtacacaaattaaggaagttctttatactttgcatcttctt |
49781373 |
T |
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