View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4664_low_6 (Length: 338)
Name: NF4664_low_6
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4664_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 14319192 - 14319507
Alignment:
| Q |
20 |
tttgtaagcacaataactaataagcattctcaggaaaatcaaaattggagattcaacaaagaaaaccttcataaatggcattcagaacatggatatataa |
119 |
Q |
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| T |
14319192 |
tttgtaagcacaataactaataagcattctcaggaaaatcaaaattggagattcaacaaagaaaaccttcataattggcattcagaacatggatatataa |
14319291 |
T |
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| Q |
120 |
taatggtgcaatatttgaacacattaaacattggtatattgtatggtaagtgcttaatcttttcacttacaagtcttgcaggctcgccatattttattaa |
219 |
Q |
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| T |
14319292 |
taatggtgcaatatttgaacacattaaacattggtatattgtatggtaagtgcttaatcttttcacttacaagtcttgtaggctcgccatattttattaa |
14319391 |
T |
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| Q |
220 |
ttgacgttgtaaatatataatcaataataagtggaaagactacatgttggaacaatgtatttagtgatccaaactaaactttacc--------gtccttg |
311 |
Q |
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| T |
14319392 |
ttgacgttgtaaatacataatcaataataagtagaaagactacaagttggaataatgtatttagtgatccaaactaaactttacctgtttacggtccttg |
14319491 |
T |
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| Q |
312 |
cctcgttaaccttcat |
327 |
Q |
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| T |
14319492 |
cctcgttaaccttcat |
14319507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 41702986 - 41703022
Alignment:
| Q |
265 |
gttggaacaatgtatttagtgatccaaactaaacttt |
301 |
Q |
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| T |
41702986 |
gttggaacaatgtatttagtggtccaaactatacttt |
41703022 |
T |
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