View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4664_low_7 (Length: 318)

Name: NF4664_low_7
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4664_low_7
NF4664_low_7
[»] chr7 (21 HSPs)
chr7 (18-307)||(5086413-5086702)
chr7 (20-307)||(5609469-5609756)
chr7 (56-306)||(13783727-13783977)
chr7 (45-307)||(33972929-33973192)
chr7 (27-307)||(21824204-21824484)
chr7 (23-307)||(27244011-27244295)
chr7 (30-252)||(665004-665226)
chr7 (29-291)||(21588126-21588388)
chr7 (23-240)||(32535009-32535228)
chr7 (56-256)||(7097430-7097630)
chr7 (58-306)||(29526686-29526934)
chr7 (58-240)||(15455663-15455845)
chr7 (61-129)||(19017165-19017233)
chr7 (209-256)||(10325119-10325166)
chr7 (201-252)||(19017042-19017093)
chr7 (221-278)||(6621346-6621403)
chr7 (221-278)||(15846900-15846957)
chr7 (221-278)||(15856110-15856167)
chr7 (202-243)||(16332850-16332891)
chr7 (209-290)||(21118406-21118486)
chr7 (221-278)||(36308020-36308077)
[»] chr1 (21 HSPs)
chr1 (18-307)||(25594785-25595074)
chr1 (20-307)||(38532665-38532952)
chr1 (20-307)||(27527110-27527402)
chr1 (59-307)||(22161610-22161858)
chr1 (53-307)||(4179824-4180078)
chr1 (48-266)||(29600856-29601074)
chr1 (68-307)||(11644617-11644856)
chr1 (23-291)||(21182460-21182729)
chr1 (58-306)||(26418748-26418996)
chr1 (58-306)||(32108284-32108532)
chr1 (202-306)||(11420321-11420425)
chr1 (201-280)||(10848579-10848658)
chr1 (209-255)||(3601275-3601321)
chr1 (202-256)||(8860175-8860229)
chr1 (209-294)||(11351612-11351697)
chr1 (223-273)||(31592311-31592361)
chr1 (221-278)||(17431184-17431241)
chr1 (221-278)||(44002267-44002324)
chr1 (209-290)||(44839876-44839957)
chr1 (208-252)||(28214300-28214344)
chr1 (208-256)||(51080725-51080773)
[»] chr4 (9 HSPs)
chr4 (20-307)||(15065725-15066012)
chr4 (57-307)||(17459257-17459507)
chr4 (50-307)||(25553099-25553356)
chr4 (20-250)||(20089074-20089304)
chr4 (56-306)||(47782847-47783097)
chr4 (202-304)||(4946655-4946757)
chr4 (202-256)||(13200842-13200896)
chr4 (201-252)||(40686962-40687013)
chr4 (208-266)||(48213501-48213559)
[»] scaffold0007 (1 HSPs)
scaffold0007 (20-307)||(234673-234960)
[»] chr3 (18 HSPs)
chr3 (33-307)||(2651767-2652041)
chr3 (53-307)||(9734410-9734664)
chr3 (20-307)||(14504079-14504366)
chr3 (56-306)||(15789899-15790149)
chr3 (53-307)||(8968346-8968600)
chr3 (23-304)||(2439313-2439594)
chr3 (48-309)||(34934937-34935198)
chr3 (124-307)||(26307299-26307482)
chr3 (202-306)||(32073567-32073671)
chr3 (201-252)||(29704651-29704702)
chr3 (208-280)||(37796615-37796687)
chr3 (209-280)||(36684916-36684987)
chr3 (208-255)||(38998917-38998964)
chr3 (235-309)||(46091971-46092045)
chr3 (206-279)||(10980951-10981024)
chr3 (209-249)||(8705723-8705763)
chr3 (209-249)||(9057610-9057650)
chr3 (208-248)||(48052386-48052426)
[»] chr2 (11 HSPs)
chr2 (20-307)||(34071324-34071610)
chr2 (48-307)||(21084957-21085216)
chr2 (53-307)||(31426302-31426556)
chr2 (59-307)||(20471035-20471283)
chr2 (60-307)||(27072222-27072469)
chr2 (58-256)||(7861461-7861655)
chr2 (209-280)||(29894350-29894421)
chr2 (209-280)||(36365051-36365122)
chr2 (221-278)||(17102760-17102817)
chr2 (56-137)||(18777132-18777213)
chr2 (221-278)||(32019494-32019551)
[»] chr6 (18 HSPs)
chr6 (53-307)||(21698563-21698817)
chr6 (29-307)||(11986044-11986322)
chr6 (53-307)||(30063625-30063879)
chr6 (29-307)||(10515983-10516261)
chr6 (146-307)||(1638228-1638389)
chr6 (203-307)||(1641256-1641360)
chr6 (58-306)||(15950658-15950906)
chr6 (60-246)||(7090441-7090627)
chr6 (202-243)||(30148022-30148063)
chr6 (56-256)||(13434209-13434409)
chr6 (203-252)||(8942161-8942210)
chr6 (60-107)||(15923709-15923756)
chr6 (208-255)||(19047097-19047144)
chr6 (203-257)||(6047326-6047379)
chr6 (221-278)||(17812263-17812320)
chr6 (221-278)||(33132267-33132324)
chr6 (222-274)||(11731581-11731633)
chr6 (60-176)||(23631446-23631562)
[»] chr5 (13 HSPs)
chr5 (53-307)||(19609115-19609369)
chr5 (48-307)||(20705964-20706223)
chr5 (56-306)||(8724566-8724816)
chr5 (56-306)||(13065431-13065681)
chr5 (23-307)||(11619131-11619415)
chr5 (48-307)||(20587488-20587744)
chr5 (60-307)||(42765139-42765386)
chr5 (60-307)||(36961934-36962181)
chr5 (56-257)||(18521642-18521842)
chr5 (206-257)||(13559983-13560034)
chr5 (208-266)||(21708484-21708542)
chr5 (221-278)||(11123618-11123675)
chr5 (56-105)||(31291570-31291619)
[»] scaffold0114 (1 HSPs)
scaffold0114 (23-307)||(11492-11776)
[»] chr8 (12 HSPs)
chr8 (23-307)||(28161916-28162200)
chr8 (48-307)||(25732299-25732558)
chr8 (29-306)||(7995014-7995291)
chr8 (56-279)||(3989378-3989601)
chr8 (32-184)||(12784177-12784328)
chr8 (56-119)||(12246943-12247006)
chr8 (60-249)||(25133033-25133221)
chr8 (209-290)||(26440817-26440898)
chr8 (208-252)||(39533709-39533753)
chr8 (200-245)||(12189370-12189415)
chr8 (200-245)||(12433798-12433843)
chr8 (221-257)||(14848426-14848462)
[»] scaffold0251 (1 HSPs)
scaffold0251 (56-306)||(2197-2447)
[»] scaffold1689 (1 HSPs)
scaffold1689 (21-307)||(734-1020)
[»] scaffold0445 (1 HSPs)
scaffold0445 (21-307)||(13981-14269)
[»] scaffold0388 (1 HSPs)
scaffold0388 (54-307)||(14414-14666)
[»] scaffold0071 (1 HSPs)
scaffold0071 (60-306)||(52536-52782)
[»] scaffold0068 (1 HSPs)
scaffold0068 (208-266)||(5368-5426)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 5086413 - 5086702
Alignment:
Q  18 ccattgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagt 117  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5086413 ccattgatataggggaggcccttggtctacatcacgcgattcgatggatatatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagt 5086512  T
Q  118 agcagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcat 217  Q
    ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  5086513 agctgattatttcaacaatggctgtggtgatgtcaccgaatttggttctattatgaatagtagtatttactttaccaagacccatttaacaaactctcat 5086612  T
Q  218 gtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  5086613 gtcgagtttattaggaggcaagcgaatgaggttgcacatactctagctagggcagccacatctagtactagcttccagatctttgatgat 5086702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 5609756 - 5609469
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    |||||| ||||||||||| | ||| |||||||||| | ||||||||| || ||||||||||| |||||||||||||| || |||| ||||||||||||||    
T  5609756 attgatataggggaggccttgggtttacatcacgcaactcggtggatacaagaacttcaactcacaaatgttgatttcgaggttggctctaaaagagtag 5609657  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgt 219  Q
    | |||||||||||||| || ||||| ||||||||| ||||||||| ||||||||||||||||||| ||||    || ||| | |||||||||||||||||    
T  5609656 ctgattatttcaacaaaggtcgtggagatgtcaccgaatttggttttattatggatagcagtatccacttctgtaacacctacttaacaaactctcatgt 5609557  T
Q  220 cgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||||||||||||||||||||  | ||| ||||||  | ||| ||||||||| ||||||||||| |||||||||||    
T  5609556 cgagtttattaggaggcaagcgaatgaggttgcatacactttagctaaagcagctacatctagtactagcttccaggtctttgatgat 5609469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 306
Target Start/End: Original strand, 13783727 - 13783977
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||||||     
T  13783727 attcggtggatccatgaacttcaactcaaaaatgttgattttgaagttgactcgaaacgagtagcggattatttcaacaaaggccgtggagatgtcaccg 13783826  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    |||||||||| || ||||| || || ||| | |||     | |   ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||    
T  13783827 aatttggttccataatggacagtagcatccatttttgtcggtcatttttaacaaaatctcatgtcgagtttactaggaggcaagcgaatgaggttgcaca 13783926  T
Q  256 tactctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
    ||||||||||| || |||||||||||||||||||||||  |||||||||||    
T  13783927 tactctagctaaggcagccacatctagttctagcttccgtatctttgatga 13783977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 45 - 307
Target Start/End: Original strand, 33972929 - 33973192
Alignment:
Q  45 tacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtgg 144  Q
    ||||||| ||||||| |||||| ||||||||||||||  ||||||||||||| || |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  33972929 tacatcatgcgattcagtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaacgagtagctgattatttcaacaatggtcgtgg 33973028  T
Q  145 tgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaat 244  Q
     ||||||||| | |||||||| ||||| ||||  ||| |  | |||   || ||  |||||||||||||||||||| ||||||||| ||| ||| | |||    
T  33973029 agatgtcaccgagtttggttccattatagataatagtttacaattttgtaacacttatttaacaaactctcatgtcaagtttattaagagacaaacaaat 33973128  T
Q  245 gaggttgctcatac-tctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||| ||||| | |||||| |||||||||||||||| |||||||||||||||||||||||    
T  33973129 gaggttgcacatacgtttagctaaggtagccacatctagtactagcttccagatctttgatgat 33973192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 307
Target Start/End: Original strand, 21824204 - 21824484
Alignment:
Q  27 taggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagatta 126  Q
    |||| |||||||| | |||| |||| ||||| |||||||| ||||||||||||||  ||||||||||||| || |||||||||||||||||||| |||||    
T  21824204 taggagaggccctggctctatatcatgcgatccggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgatta 21824303  T
Q  127 tttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcag---tatctactttaccaagacccatttaacaaactctcatgtcgag 223  Q
    ||||||||| || ||||| ||||||||| | || || |||||||||||||| ||    |  |||| ||  | ||   | |||||||||||||||||||||    
T  21824304 tttcaacaaaggtcgtggagatgtcaccgagttcggctctattatggatagtagctcaagttactgta--atga-ttacttaacaaactctcatgtcgag 21824400  T
Q  224 tttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||||||||||||| |||||||||||||||||  |||||| || |||||||| |||||||||||||||  |||||||||||    
T  21824401 tttattaggaggcaagcaaatgaggttgctcatacgttagctaaggcagccacatgtagttctagcttccaagtctttgatgat 21824484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 27244295 - 27244011
Alignment:
Q  23 gatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcag 122  Q
    ||||| |||||||||||||   ||||||| |||||||| ||||| ||| ||||||||||  ||||| ||||||| || |||||||| ||||||||||  |    
T  27244295 gatgttggggaggccctagcgttacatcatgcgattcgatggatacataaacttcaactctcaaatattgatttcgaggttgactcaaaaagagtagttg 27244196  T
Q  123 attatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcga 222  Q
    |||||||||||||||| |||||  |||||||| | |||||||| ||||||||||| ||| |  | |||   || ||  ||||||||||||||||||||||    
T  27244195 attatttcaacaatggtcgtggaaatgtcaccgagtttggttccattatggatagtagtttacaattttgtaatacttatttaacaaactctcatgtcga 27244096  T
Q  223 gtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||  ||| | ||||||||||| ||||   |||||| || ||||||||||||| ||||||||||| |||||||||||    
T  27244095 gtttattaggaaccaaacaaatgaggttgcacatatgttagctaaggcagccacatctagtactagcttccaggtctttgatgat 27244011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 665226 - 665004
Alignment:
Q  30 gggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattattt 129  Q
    |||||||||| ||| || |||| || |||||||| || ||||||||||||||| |||| ||||||||||| ||||| || ||||||||||| ||||||||    
T  665226 gggaggccctgggtttatatcatgcaattcggtgaatacatgaacttcaacttgcaaacgttgattttgaggttgattcaaaaagagtagctgattattt 665127  T
Q  130 caacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttatt 229  Q
    |||||| || || ||  |||||||||||||||||| ||||||||||||  ||||| | |||  ||  ||| |||||||||||||||||||||||||||||    
T  665126 caacaaaggtcgaggacatgtcaccaaatttggttatattatggatagttgtatccaattttgcagtacctatttaacaaactctcatgtcgagtttatt 665027  T
Q  230 aggaggcaagcgaatgaggttgc 252  Q
    ||||| ||||| |||||||||||    
T  665026 aggagacaagcaaatgaggttgc 665004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 21588388 - 21588126
Alignment:
Q  29 ggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatt 128  Q
    ||||||||||| | |||| |||| || ||||||||||||||||||||||||||| |||  ||||||||||| ||||| || |||| | |||| |||||||    
T  21588388 ggggaggccctggttctatatcatgcaattcggtggattcatgaacttcaacttgcaatcgttgattttgaggttgattcgaaaataatagctgattatt 21588289  T
Q  129 tcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttat 228  Q
    ||||||| ||  | || ||||| ||| |||||||||| |||||||| || |||||| | ||    |   || ||||||||||||||||||||||||||||    
T  21588288 tcaacaaaggttgaggagatgttaccgaatttggttccattatggacagtagtatccaattctatagttcctatttaacaaactctcatgtcgagtttat 21588189  T
Q  229 taggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagctt 291  Q
    |||||||||| | ||||||||||| |||    ||||||  | ||||||||||||| |||||||    
T  21588188 taggaggcaatcaaatgaggttgcacatgaattagctaacgcagccacatctagtactagctt 21588126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 32535228 - 32535009
Alignment:
Q  23 gatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcag 122  Q
    ||||| ||||||||||| ||  ||||||| || ||||||||||| |||||||||||||||||||||||||| || || ||| ||||  |||||||||| |    
T  32535228 gatgttggggaggccctgggcttacatcatgcaattcggtggatacatgaacttcaacttacaaatgttgacttcgaggttaactcataaagagtagctg 32535129  T
Q  123 attatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaa--ctctcatgtc 220  Q
    ||||||||||||| || ||||| ||||||||| ||||||||||||| |||||||  || ||| |||||   |  ||  ||||||||||  ||||||||||    
T  32535128 attatttcaacaaaggtcgtggagatgtcaccgaatttggttctatcatggataatagcatccacttttgtagcacttatttaacaaactctctcatgtc 32535029  T
Q  221 gagtttattaggaggcaagc 240  Q
    |||||||||| ||| |||||    
T  32535028 gagtttattaagagacaagc 32535009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 7097630 - 7097430
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    |||||||||||  |||||||||| || ||||||||||||||||| || || || |||| |||||| | |||||| ||||| ||| | || |||  ||||     
T  7097630 attcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctggttattttaacaaaggcagaggagatagcaccg 7097531  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    ||||||| || ||||||||||  | |||| | |||   || |||  ||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  7097530 aatttggatccattatggataaaaatatcaagttttgtaatacctttttaataaactcttatgtcgagtttattaagaggcaagcaaatgaggttgctca 7097431  T
Q  256 t 256  Q
    |    
T  7097430 t 7097430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 29526686 - 29526934
Alignment:
Q  58 tcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaa 157  Q
    |||||||||  |||||||||| || ||||||||||||||||| || || || |||| | |||| |||||||||||||| |   | || |||  |||| ||    
T  29526686 tcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacaatagctgattatttcaacaaagcaagaggagataacaccgaa 29526785  T
Q  158 tttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcata 257  Q
    ||||| || |||||||| |  | |||| | |||   || | |  |||||||||||||||||||||||||| |||||||||||| |||||||||||||||     
T  29526786 tttgggtccattatggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatg 29526885  T
Q  258 ctctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
       |||||| || ||||||||   || |||||||||| |||||||||||    
T  29526886 aattagctaaggcagccacattaggtcctagcttccacatctttgatga 29526934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 240
Target Start/End: Original strand, 15455663 - 15455845
Alignment:
Q  58 tcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaa 157  Q
    |||||||||  |||||||||| || ||||||||||||||||| || || || |||| |||||| |||||||||||||| |   | || |||  |||| ||    
T  15455663 tcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaaggcaagaggagataacaccgaa 15455762  T
Q  158 tttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagc 240  Q
    ||||| || |||||||| |  | |||| | |||   || | |  |||||||||||||||||||||||||| ||||||||||||    
T  15455763 tttgggtccattatggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagc 15455845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 19017233 - 19017165
Alignment:
Q  61 gtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattattt 129  Q
    |||||| |||||||||||||  ||| ||||||||||||| |||||||| |||| |||||| ||||||||    
T  19017233 gtggatacatgaacttcaacccacagatgttgattttgaggttgactcgaaaaaagtagctgattattt 19017165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 10325166 - 10325119
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcat 256  Q
    ||||||||||||||||||| |||||||||| |||||||||| ||||||    
T  10325166 aactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcat 10325119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 19017093 - 19017042
Alignment:
Q  201 atttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||| ||||||    
T  19017093 atttaacaaactctcgtgttgagtttattaggaggcaagcaaatgtggttgc 19017042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 6621403 - 6621346
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  6621403 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 6621346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 15846957 - 15846900
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  15846957 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 15846900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 15856167 - 15856110
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  15856167 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 15856110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 16332850 - 16332891
Alignment:
Q  202 tttaacaaactctcatgtcgagtttattaggaggcaagcgaa 243  Q
    ||||| ||||||||  ||||||||||||||||||||||||||    
T  16332850 tttaataaactctcgagtcgagtttattaggaggcaagcgaa 16332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 21118406 - 21118486
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagct 290  Q
    ||||||||||||||||| | |||||||||||| ||||||||  |||||  | |||||||||||||  |||||| | ||||||    
T  21118406 aactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatggt-tagctagggtagcaccatctattgctagct 21118486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 36308020 - 36308077
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  36308020 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 36308077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 25595074 - 25594785
Alignment:
Q  18 ccattgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagt 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||     
T  25595074 ccattgatgtaggggaggccctgggtctacatcacgcgattcggtggatatatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagc 25594975  T
Q  118 agcagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcat 217  Q
    ||| ||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  25594974 agctgattatttcaacaatggtcgtggtgatatcaccgaatttggttctataatggacagcagtatttactttaccaagacctatttaacaaactctcat 25594875  T
Q  218 gtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||    
T  25594874 gtcgagtttattaggaggcaggcgaatgaggttgcacatactctaactagggcagccacatctagtactagcttccagacctttgatgat 25594785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 38532952 - 38532665
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    |||||||||||||||||| | |||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38532952 attgatgtaggggaggccatgggtctacaccacgcaattcggtggatacaagaacttcaacttacaaatgttgattttgaagttgactctaacagagtag 38532853  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgt 219  Q
    | |||||||||||||| || ||||| ||||  ||| ||||||| ||||||||||| |||||||| |||||| | || ||  | |||||||||||||||||    
T  38532852 ctgattatttcaacaaaggtcgtggagatgctaccgaatttggctctattatggacagcagtatttacttttctaatacttacttaacaaactctcatgt 38532753  T
Q  220 cgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||| ||  |||||||||||    
T  38532752 cgagtttattatgaggcaagcgaatgaggttgcacatacactagctagggtagccacatctaatactagcttacatgtctttgatgat 38532665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 27527110 - 27527402
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    |||||||||||||||||||| |||||||| || || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27527110 attgatgtaggggaggccctgggtctacaccatgcaattcggtggatacaagaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 27527209  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactc-----t 214  Q
    | ||||||||| |||| |||||||| |||   ||| ||||||||||||||||||| |||||||| |||||| | || ||  | |||||||||||     |    
T  27527210 ctgattatttctacaaaggccgtggagatactaccgaatttggttctattatggacagcagtatttacttttctaatacttacttaacaaactctcatgt 27527309  T
Q  215 catgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||| ||||||||||| |||||||||||    
T  27527310 catgtcgagtttattaggaggcaagcgaatgaggttgcacatacactagttagggcagccacatctagtactagcttccaggtctttgatgat 27527402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 59 - 307
Target Start/End: Original strand, 22161610 - 22161858
Alignment:
Q  59 cggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaat 158  Q
    |||||||| || ||||||||| | |||||||||||||| ||  ||||||||||||||||||| |||||||||||||| || | ||| ||| |||||||||    
T  22161610 cggtggatacaagaacttcaattaacaaatgttgatttcgagattgactctaaaagagtagctgattatttcaacaaaggtcatggagatatcaccaaat 22161709  T
Q  159 ttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatac 258  Q
    ||||||||||||||||||| |||||| | |||   || ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22161710 ttggttctattatggatagtagtatccaattttgtaatacttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcataa 22161809  T
Q  259 tctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||| || |||| |||||||| ||||| |||||||||||||||||    
T  22161810 tctagctaaggcagccgcatctagtactagcctccagatctttgatgat 22161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 53 - 307
Target Start/End: Original strand, 4179824 - 4180078
Alignment:
Q  53 gcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtca 152  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||| |||||||    
T  4179824 gcgattcggtggattcatgaacttcaacttttaaatgttgattttgaagttgactaaaaaagagtagctgattatttcaacaatggtcgtggagatgtca 4179923  T
Q  153 ccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    |  ||||||| ||||||||| | || ||| || | ||   ||| |   |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4179924 ctgaatttggctctattatgaacagtagtgtccaattctgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 4180023  T
Q  253 tcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||  | || |||  | ||||||||||||| ||||||||||| | |||||||||    
T  4180024 tcatgttttaactaaagcagccacatctagtactagcttccaggtgtttgatgat 4180078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 29600856 - 29601074
Alignment:
Q  48 atcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtga 147  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||| || || |||||||||||| |||| ||||||||||||||||| ||||| ||    
T  29600856 atcacgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagaatagctgattatttcaacaatggtcgtggaga 29600955  T
Q  148 tgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgag 247  Q
    ||||||| | || || ||||| ||||| |||||| || | ||    || ||| ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  29600956 tgtcaccgagttcggctctatcatggacagcagtgtccaattctgtaacaccaatttatcaaactctcatgtcgagtttattaggaggcaagcaaatgag 29601055  T
Q  248 gttgctcatactctagcta 266  Q
    ||||| ||| || ||||||    
T  29601056 gttgcacatgctttagcta 29601074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 68 - 307
Target Start/End: Original strand, 11644617 - 11644856
Alignment:
Q  68 catgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatttggttcta 167  Q
    |||||||||||||| ||||||||||  ||  | |||||||| ||||||||||| |||||||||||||| || ||||  ||||||||  | ||||||||||    
T  11644617 catgaacttcaactcacaaatgttgtgttcaaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtgaagatgtcactgactttggttcta 11644716  T
Q  168 ttatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctag 267  Q
    ||||| | || || ||| | ||    || ||  |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||     
T  11644717 ttatgcacagtagcatccatttctgtaacacttatttaacaaactctcatgtcgagtttattaggaggcaaacaaatgaggttgcgcatactttagctaa 11644816  T
Q  268 ggtagccacatctagttctagcttccagatctttgatgat 307  Q
    || || |||||||| | ||| |||||||||||||||||||    
T  11644817 ggcagtcacatctaatactaacttccagatctttgatgat 11644856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 21182460 - 21182729
Alignment:
Q  23 gatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagag-tagca 121  Q
    ||||| ||||||||||| ||  ||||||| || ||||| ||||| ||||||||||||||| |||||||||| ||  | |||||||| ||||||| ||||     
T  21182460 gatgttggggaggccctgggcttacatcatgcaattcgctggatacatgaacttcaactttcaaatgttgacttcaaggttgactcaaaaagagttagcc 21182559  T
Q  122 gattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcg 221  Q
    |||||||||||||| ||  |||| ||||||||  |||||||||||||||||||||| || ||| | ||    |  ||  |||||||||||||||||||||    
T  21182560 gattatttcaacaaaggttgtggagatgtcactgaatttggttctattatggatagtagcatccaattatgtagcacttatttaacaaactctcatgtcg 21182659  T
Q  222 agtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagctt 291  Q
    ||||||||||||||||| | ||||||||||| ||| |  || ||| || ||| ||||||||| |||||||    
T  21182660 agtttattaggaggcaaacaaatgaggttgcacatgcattaactaagggagctacatctagtactagctt 21182729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 306
Target Start/End: Complemental strand, 26418996 - 26418748
Alignment:
Q  58 tcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaa 157  Q
    |||||||||  |||||||||| || ||||||||||||||||| || || || |||| |||||| |||||||||||||| |   | || |||  |||| ||    
T  26418996 tcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaaggcaagaggagataacaccgaa 26418897  T
Q  158 tttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcata 257  Q
    ||||| || |||||||| |  | |||| | |||   || | |  |||||||||||||||||||||||||| |||||||||||| |||||||||||||||     
T  26418896 tttgggtccattatggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatg 26418797  T
Q  258 ctctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
       |||||| || ||||||||   || |||||||||| |||||||||||    
T  26418796 aattagctaaggcagccacattaggtcctagcttccacatctttgatga 26418748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 32108284 - 32108532
Alignment:
Q  58 tcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaa 157  Q
    |||||||||  |||||||||| || ||||||||||||||||| || || || |||| |||||| |||||||||||||| |   | || |||  |||| ||    
T  32108284 tcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaaggcaagaggagataacaccgaa 32108383  T
Q  158 tttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcata 257  Q
    ||||| || |||||||| |  | |||| | |||   || | |  |||||||||||||||||||||||||| |||||||||||| |||||||||||||||     
T  32108384 tttgggtccattatggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatg 32108483  T
Q  258 ctctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
       |||||| || ||||||||   || |||||||||| |||||||||||    
T  32108484 aattagctaaggcagccacattaggtcctagcttccacatctttgatga 32108532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 306
Target Start/End: Complemental strand, 11420425 - 11420321
Alignment:
Q  202 tttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatcttt 301  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    ||| || || ||||||||   || |||||||||| ||||||    
T  11420425 tttaacaaactctcatgtcgagtttattaggaggcaagtaaatgaggttgttcatgaattagttaaggcagccacattaggtcctagcttccacatcttt 11420326  T
Q  302 gatga 306  Q
    |||||    
T  11420325 gatga 11420321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 10848579 - 10848658
Alignment:
Q  201 atttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatct 280  Q
    |||||||||||| ||||||||||||||||||||  ||||  |||||||| ||||||| | |||| ||||||| |||||||    
T  10848579 atttaacaaactatcatgtcgagtttattaggatacaagttaatgaggtcgctcataatttagcaagggtagtcacatct 10848658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 3601321 - 3601275
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  3601321 aactctcatgtcgagttcaataggaggcaagcgaatgaggttgctca 3601275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 8860229 - 8860175
Alignment:
Q  202 tttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcat 256  Q
    ||||||||||||| ||||| | |||||||||||||||| ||||||||| ||||||    
T  8860229 tttaacaaactctaatgtcaaatttattaggaggcaagtgaatgaggtcgctcat 8860175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 11351697 - 11351612
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttcca 294  Q
    ||||||||||||||||| | |||||||||||| |||| ||| ||||||    |||||||||||||| |||||  | ||||||||||    
T  11351697 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagcttcca 11351612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 31592311 - 31592361
Alignment:
Q  223 gtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagc 273  Q
    |||||||||||| ||||| ||||| |||||||||| | |||||||||||||    
T  31592311 gtttattaggagacaagccaatgaagttgctcatagtttagctagggtagc 31592361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 17431184 - 17431241
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  17431184 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 17431241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 44002267 - 44002324
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  44002267 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 44002324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 44839957 - 44839876
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagct 290  Q
    ||||||||||||||||| | |||||||||||  |||| ||| ||||||    |||||||||||||| |||||| | ||||||    
T  44839957 aactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccatctaatgctagct 44839876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 28214344 - 28214300
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    |||||||||||| |||||||||||||| |||| ||||| ||||||    
T  28214344 aaactctcatgttgagtttattaggagacaagtgaatgcggttgc 28214300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 51080773 - 51080725
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcat 256  Q
    |||||||||||||||||||| |||||||||| | |||| ||| ||||||    
T  51080773 aaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcat 51080725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 15065725 - 15066012
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15065725 attgatgtaggggaggccctgggtctacaccacgcaattcggtggatacgagaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 15065824  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgt 219  Q
      |||||||||||||| |||||||| ||||  ||| ||||||||||||||||||| | |||||| |||||| | || ||  | |||||||||||||||||    
T  15065825 ttgattatttcaacaaaggccgtggagatgctaccgaatttggttctattatggacaacagtatttacttttctaatacttacttaacaaactctcatgt 15065924  T
Q  220 cgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  15065925 cgagtttattaggaggcaagcgaatgaggttgcacatacactagctagggcagccacatctagtactagcttccaggtctttgatgat 15066012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 57 - 307
Target Start/End: Original strand, 17459257 - 17459507
Alignment:
Q  57 ttcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaa 156  Q
    |||||||||| || ||||||||| | |||||||||||||| || |||||||||||||||||||  |||||||||||||| || | ||| ||| ||||| |    
T  17459257 ttcggtggatacaagaacttcaattaacaaatgttgatttcgaggttgactctaaaagagtagttgattatttcaacaaaggtcatggagatatcaccga 17459356  T
Q  157 atttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcat 256  Q
    ||||||||||||||||||||| | |||| |||||   || ||  | |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17459357 atttggttctattatggatagtaatatccacttttgtaacacttacttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgcacat 17459456  T
Q  257 actctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
      |||||| | || ||||||||||||| ||||||||| | |||||||||||    
T  17459457 gttctagcaaaggcagccacatctagtactagcttccgggtctttgatgat 17459507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 50 - 307
Target Start/End: Original strand, 25553099 - 25553356
Alignment:
Q  50 cacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatg 149  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||    
T  25553099 cacgcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaatggccgtggagatg 25553198  T
Q  150 tcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggt 249  Q
    | ||| | || || ||||| |||||||  ||| || | ||    || ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  25553199 ttaccgagttcggctctatcatggataatagtgtccaattctgtaaaaccaatttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggt 25553298  T
Q  250 tgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||| ||| || |||||| || ||||||||||||| ||||||||||  |||||||||||    
T  25553299 tgcacatgctttagctaaggcagccacatctagtactagcttccaagtctttgatgat 25553356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 20089304 - 20089074
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    |||||||| || ||||||||  ||||  |||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||     
T  20089304 attgatgttggagaggccctgtgtctttatcatgcaattcggtggattcatgaacttcaacttgcaaatgttgattttgaggttgactcaaaaagagtaa 20089205  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgt 219  Q
    | || ||||||||||| |  || || ||||||||| ||||||| || ||||||||||  |||||| | ||   ||   |  |||||| ||||||||||||    
T  20089204 ctgactatttcaacaaagatcgaggagatgtcaccgaatttgggtccattatggataatagtatccaattatgcagttcatatttaataaactctcatgt 20089105  T
Q  220 cgagtttattaggaggcaagcgaatgaggtt 250  Q
    | ||||||||| ||| ||||  |||||||||    
T  20089104 caagtttattacgagacaagtaaatgaggtt 20089074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 306
Target Start/End: Original strand, 47782847 - 47783097
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    |||||||||||  |||||||| |||| ||||||||||||||||| || || || |||| |||||| |||||||||||||| |   | || |||  ||||     
T  47782847 attcggtggatcaatgaactttaactcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaaagcaagaggagataacaccg 47782946  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    ||||||| || |||||||| |  |  ||| | |||   || | |  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  47782947 aatttggatccattatggagaatacaatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctca 47783046  T
Q  256 tactctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
    |    |||||| || ||||||||   || |||||||||| |||||||||||    
T  47783047 tgaattagctaaggcagccacattaggtcctagcttccacatctttgatga 47783097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 4946757 - 4946655
Alignment:
Q  202 tttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatcttt 301  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||||||||||||    |||||| |  ||||||||   || |||||||||||||||||    
T  4946757 tttaacaaattctcatatcgagtttattaggaggcaagcaaatgaggttgctcatgagttagctaagacagccacattatgtcctagcttccagatcttt 4946658  T
Q  302 gat 304  Q
    |||    
T  4946657 gat 4946655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 13200842 - 13200896
Alignment:
Q  202 tttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcat 256  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  13200842 tttaacaaactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcat 13200896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 40686962 - 40687013
Alignment:
Q  201 atttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    ||||||||||||||||||| ||||||||| |||| ||| | |||||||||||    
T  40686962 atttaacaaactctcatgtggagtttattgggagacaaacaaatgaggttgc 40687013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 48213501 - 48213559
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagcta 266  Q
    |||||||| |||||||||| |  |||||||||| |||||||||||||||| | ||||||    
T  48213501 aaactctcgtgtcgagtttgtacggaggcaagcaaatgaggttgctcatagtttagcta 48213559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 234960 - 234673
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    |||||||||||||||||||| ||||||||  |||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  234960 attgatgtaggggaggccctgggtctacactacgcaattcggtggatacaagaacttcaacctacaaatgttgattttgaagttgactctaaaagagtag 234861  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgt 219  Q
    | |||||||| ||||| ||  | || ||||  ||| ||||||| ||||||||||| || ||||| |||||| | || ||  | |||||||||||||||||    
T  234860 ctgattatttgaacaaaggttgcggagatgctaccgaatttggctctattatggacagtagtatttacttttctaatacttacttaacaaactctcatgt 234761  T
Q  220 cgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||| | ||||||||||| |||||||||||||||||||||||    
T  234760 cgagtttattaggaggcaaacgaatgaggttgcacatacactagctagggcatccacatctagtactagcttccagatctttgatgat 234673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 307
Target Start/End: Complemental strand, 2652041 - 2651767
Alignment:
Q  33 aggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaa 132  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||    
T  2652041 aggccctgggtctacaccacgcaattcggtggatacaagaacttcaacttacaattgttgattttgaagttgactataaaagagtagctgattatttcaa 2651942  T
Q  133 caatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattagg 232  Q
    ||| ||||| || ||||  ||| ||||||| ||||||||||| | || ||| |||||| | || ||  ||||||||||||||||||||||||||||||||    
T  2651941 caaaggccgcggagatgctaccgaatttggctctattatggacaacaatatttacttttctaacacttatttaacaaactctcatgtcgagtttattagg 2651842  T
Q  233 aggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||| ||||||||||||| ||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  2651841 aggcaaacgaatgaggttgcacatacactagctagggcagccacatctagtactagcttccaggtctttgatgat 2651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 9734664 - 9734410
Alignment:
Q  53 gcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtca 152  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||| || |||||||||||||||||||| || |||||||||||||| | ||| |||||||    
T  9734664 gcgattaggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaatggtcatggagatgtca 9734565  T
Q  153 ccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    || | ||||| ||||| |||||||  ||| || | ||    || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9734564 ccgagtttggctctatcatggataatagtgtccaattctgtaataccaatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 9734465  T
Q  253 tcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
     ||| || |||||| || ||||||||||||| ||||||||||| |||||||||||    
T  9734464 acatgctttagctaaggcagccacatctagtactagcttccaggtctttgatgat 9734410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 14504366 - 14504079
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    |||||||| |||||||| |||||| || |||| ||  |||||||||| || ||||||||||| |||||||||||||| || ||||||| ||||||| |||    
T  14504366 attgatgttggggaggctctaggtttatatcatgcacttcggtggatacaagaacttcaactcacaaatgttgatttcgaggttgactttaaaagaatag 14504267  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgt 219  Q
    | |||||||||||||| || | ||| ||||||||| ||||||||| |||||||||||| | |||| ||||    || ||  | |||| ||| ||||||||    
T  14504266 ctgattatttcaacaaaggtcatggagatgtcaccgaatttggttttattatggatagtaatatccacttctgtaacacatacttaaaaaattctcatgt 14504167  T
Q  220 cgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||| |  ||||||||||||| ||||||||| | |||||||||||    
T  14504166 cgagtttattaggaggcaagcgaatgaggttgcacacgctctagctaagacagccacatctagtactagcttcctggtctttgatgat 14504079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 56 - 306
Target Start/End: Original strand, 15789899 - 15790149
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||| |||||||||     
T  15789899 attcggtggatccatgaacttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcagattatttcaacaaaggtcgtggagatgtcaccg 15789998  T
Q  156 aatttggttctattatggatagcagtatctactt-taccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctc 254  Q
    ||||||||||||| ||||| || || ||  | || |  | |  | | |||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  15789999 aatttggttctataatggacagtagcattcatttctgtcgat-cacttttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcac 15790097  T
Q  255 atactctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
    ||| |||||||| || |||||||||||||||||||||||  |||||||||||    
T  15790098 ataatctagctaaggcagccacatctagttctagcttccgtatctttgatga 15790149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 8968600 - 8968346
Alignment:
Q  53 gcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtca 152  Q
    |||||||||||||| ||||||||||||||  ||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||| ||||  |    
T  8968600 gcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaacggccgtggagatggta 8968501  T
Q  153 ccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    || | || |||||||| |||||||  ||| || | ||    || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8968500 ccgagttcggttctatcatggataatagtgtccaattctgtaaaaccaatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 8968401  T
Q  253 tcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
     ||| || |||||| || ||||||||||||| ||||||||||  |||||||||||    
T  8968400 acatgctttagctaaggcagccacatctagtactagcttccaagtctttgatgat 8968346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 2439313 - 2439594
Alignment:
Q  23 gatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcag 122  Q
    |||||||| |||||||| | | || |||| |||||||||||||| ||||||||||||||  ||||||||||||| || |||||||| ||||||||||| |    
T  2439313 gatgtaggagaggccctggctttaaatcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctg 2439412  T
Q  123 attatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatcta-ctttaccaagacccatttaacaaactctcatgtcg 221  Q
    ||||||||||||| || ||||| ||||||||| | ||||| || ||||||||||| ||| || | |||    ||     |||||||||||||||||||||    
T  2439413 attatttcaacaaaggtcgtggagatgtcaccgagtttggctccattatggatagtagt-tcaagcttctgtaatggttatttaacaaactctcatgtcg 2439511  T
Q  222 agtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgat 304  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| || |||||||| |||| ||||||||||  ||||||||    
T  2439512 agtttattaggaggcaagcaaatgaggttgctcatactttagctaaggcagccacatgtagtactagcttccaagtctttgat 2439594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 309
Target Start/End: Original strand, 34934937 - 34935198
Alignment:
Q  48 atcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtga 147  Q
    |||| |||||||||||||| ||||||||||||||  ||||||||||||| || |||||||  ||||||||||| ||||||||||||||||| ||||| ||    
T  34934937 atcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactaaaaaagagtagctgattatttcaacaatggtcgtggaga 34935036  T
Q  148 tgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgag 247  Q
    ||||||| | ||||| || ||||||||||| ||| |  ||||    ||     |||||||||||||||||||||||||||||||||||||||| ||||||    
T  34935037 tgtcaccgagtttggctccattatggatagtagtttaaacttctgtaacgattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgag 34935136  T
Q  248 gttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgatgt 309  Q
    ||||| ||||   |||||| || |||||||| |||| |||||||||||   |||||||||||    
T  34935137 gttgcacataagttagctaaggcagccacatgtagtactagcttccaggcatttgatgatgt 34935198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 307
Target Start/End: Original strand, 26307299 - 26307482
Alignment:
Q  124 ttatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgag 223  Q
    ||||||||| || || ||||| ||||||||  ||||||| |||||||||||||| |||||  | ||    |  ||  |||||| |||||||| |||||||    
T  26307299 ttatttcaataaaggtcgtggagatgtcacggaatttggctctattatggatagtagtattcaattatgtagcacttatttaataaactctcctgtcgag 26307398  T
Q  224 tttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||||||||||||  ||||||||||| ||| |  ||||||||| ||||||||||||| |||| |||||  |||||||||||    
T  26307399 tttattaggaggcaagtaaatgaggttgcacatgcattagctagggcagccacatctagtactagtttccatgtctttgatgat 26307482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 306
Target Start/End: Complemental strand, 32073671 - 32073567
Alignment:
Q  202 tttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatcttt 301  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||    |||||| || ||||||||   || |||||||||| ||||||    
T  32073671 tttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagctaaggcagccacattaggtcctagcttccacatcttt 32073572  T
Q  302 gatga 306  Q
    |||||    
T  32073571 gatga 32073567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 29704651 - 29704702
Alignment:
Q  201 atttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    |||||| |||||||||||| || |||||||||||||||||||||| ||||||    
T  29704651 atttaaaaaactctcatgttgaatttattaggaggcaagcgaatgtggttgc 29704702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 37796615 - 37796687
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatct 280  Q
    |||| ||||||||||||||| |||||||||||| |||||||| ||||| |   |||| ||||||||| |||||    
T  37796615 aaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcacaaattagcgagggtagccccatct 37796687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 36684916 - 36684987
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatct 280  Q
    ||||||||||||||||| | |||||||||||| |||| ||| ||||||    |||||||||||||| |||||    
T  36684916 aactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccccatct 36684987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 38998917 - 38998964
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    |||||||||||||||||||| |||||||||||| |||| ||| |||||    
T  38998917 aaactctcatgtcgagtttaataggaggcaagctaatggggtcgctca 38998964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 46091971 - 46092045
Alignment:
Q  235 gcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgatgt 309  Q
    |||||| ||||||||||| |||||  |||||| |  | | ||||||||| ||| |||||||||||||||||||||    
T  46091971 gcaagcaaatgaggttgcacatacattagctaagacaactacatctagtactaacttccagatctttgatgatgt 46092045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 10981024 - 10980951
Alignment:
Q  206 acaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatc 279  Q
    |||||||| || || |||||||||||||| ||| | ||| |||||||||||| ||| |||||||  ||||||||    
T  10981024 acaaactcgcaggttgagtttattaggagacaaacaaataaggttgctcatagtcttgctagggcggccacatc 10980951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 8705723 - 8705763
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggt 249  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  8705723 aactctcatgtcgagttcaataggaggcaagctaatgaggt 8705763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 9057610 - 9057650
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggt 249  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  9057610 aactctcatgtcgagttcaataggaggcaagctaatgaggt 9057650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 48052386 - 48052426
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgagg 248  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  48052386 aaactcacatgttgagtttattaggaggcaagctaatgagg 48052426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 34071610 - 34071324
Alignment:
Q  20 attgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    ||||| || ||||||||||| ||| ||||||| || |||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||    
T  34071610 attgacgttggggaggccctgggtttacatcatgcaattcggtggattcatgaacttcaactcactaatgttgatttcgaggttgactctaaaagagtag 34071511  T
Q  120 cagattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgt 219  Q
    | ||||| |||||||||||  | || ||||||||| |||||||||| ||||| |||||  ||||| |||||   || ||| |||||||||||||||||||    
T  34071510 ctgattacttcaacaatggttg-ggagatgtcaccgaatttggttcaattatagatagtggtatccacttttgtaacacctatttaacaaactctcatgt 34071412  T
Q  220 cgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||| |||||||||| |||| ||||||||||||| || ||| |||||| || |||||||||||||||||||||| || |||||||||||    
T  34071411 cgaatttattaggaagcaaacgaatgaggttgcacacactttagctaaggcagccacatctagttctagcttctaggtctttgatgat 34071324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 307
Target Start/End: Complemental strand, 21085216 - 21084957
Alignment:
Q  48 atcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtga 147  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| ||    
T  21085216 atcacgcgattcggtggatccatgaacttcaactctcaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaatggtcgtggaga 21085117  T
Q  148 tgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgag 247  Q
    ||||||| | || ||||||||||||||||| ||| || | |||   || ||  ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  21085116 tgtcaccgagttcggttctattatggatagtagtgtccaattttgtaacacaaatttatcaaactctcatgtcgagtttattaggaggcaagcaaatgag 21085017  T
Q  248 gttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||| ||| || |||||| || ||||||||||||| ||| ||| ||| |||||||||||    
T  21085016 gttgcacatgctttagctaaggcagccacatctagtactacctttcaggtctttgatgat 21084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 307
Target Start/End: Original strand, 31426302 - 31426556
Alignment:
Q  53 gcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtca 152  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  31426302 gcgattcggtggattcatgaacttcaacttttaaatgttgattttgaagtggactcaaaaagagtagctgattatttcaacaatggtcgtggagatgtca 31426401  T
Q  153 ccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    || ||||||| ||||||||||| || ||| || | ||   ||| |   |||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  31426402 ccgaatttggctctattatggacagtagtgtccaattctgcaataattatttaacaaactctcatgtcgagtttattaagaggcaagcaaatgaggttgc 31426501  T
Q  253 tcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||  | || |||  | ||||||||||||| ||||||||||| | |||||||||    
T  31426502 tcatgttttaactaaagcagccacatctagtactagcttccaggtgtttgatgat 31426556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 59 - 307
Target Start/End: Original strand, 20471035 - 20471283
Alignment:
Q  59 cggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaat 158  Q
    |||||||| || ||||||||||| || ||||||||||| || |||||||||||||||||||| || ||||||||||| |||| ||| ||| ||||| |||    
T  20471035 cggtggatacaagaacttcaactaactaatgttgatttcgaggttgactctaaaagagtagctgactatttcaacaaaggccatggagatatcaccgaat 20471134  T
Q  159 ttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatac 258  Q
    | ||||| ||||||||||  |||||| | ||     | |   | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  20471135 tcggttccattatggataatagtatccaattgtgtcacatttacttaacaaactctcatgtagagtttattaggaggcaagcaaatgaggttgctcatac 20471234  T
Q  259 tctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||| || |||| |||||||| ||||||||||| |||||||||||    
T  20471235 tctagctaaggcagccgcatctagtactagcttccaggtctttgatgat 20471283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 307
Target Start/End: Original strand, 27072222 - 27072469
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatt 159  Q
    ||||||| || ||||||||| | |||||||||||||| || |||||||||||||||||||| |||||||||||||| |||| ||| ||| ||||| ||||    
T  27072222 ggtggatacaagaacttcaaataacaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcaccgaatt 27072321  T
Q  160 tggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatact 259  Q
     || || ||||||||||  |||||| | |      | |   | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||    
T  27072322 cggctccattatggataagagtatccaatggtgtcacagttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacact 27072421  T
Q  260 ctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||| | || |||| |||||||| ||||||||||||| |||||||||    
T  27072422 ctagccaaggcagccgcatctagtactagcttccagatttttgatgat 27072469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 256
Target Start/End: Original strand, 7861461 - 7861655
Alignment:
Q  58 tcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaa 157  Q
    |||||||||  |||||||||| || ||||||||||||||||| || || |  |||| | |||| |||||||| ||||| | | | || |||   ||||||    
T  7861461 tcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagatttgaaaacaatagctgattattttaacaaagccagaggagataataccaaa 7861560  T
Q  158 tttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcat 256  Q
    ||||| || |||||||| |  | |||| | |||  ||| | |  ||||||||||||||||||    ||||||||||||||||| |||||| ||||||||    
T  7861561 tttggatccattatggagaatactatccagttttgcaatatctttttaacaaactctcatgt----tttattaggaggcaagcaaatgagattgctcat 7861655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 29894421 - 29894350
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatct 280  Q
    ||||||||||||||||| | |||||||||||| |||| ||| ||||||    |||||||||||||| |||||    
T  29894421 aactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatct 29894350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 36365051 - 36365122
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatct 280  Q
    ||||| ||||||||||| | |||||||||||| |||||||| ||||||    |||||||||||||| |||||    
T  36365051 aactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccccatct 36365122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 17102817 - 17102760
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  17102817 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 17102760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 18777132 - 18777213
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatg 137  Q
    ||||||||||| ||||| ||| |  | |||||||||||||| || ||||| || |||| |||||| ||||||||||| ||||    
T  18777132 attcggtggatccatgaccttaagttcacaaatgttgatttcgaggttgattcgaaaaaagtagctgattatttcaataatg 18777213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 32019551 - 32019494
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  32019551 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 32019494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 307
Target Start/End: Original strand, 21698563 - 21698817
Alignment:
Q  53 gcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtca 152  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||| |||||||    
T  21698563 gcgattcggtggattcaagaaattcaacttttaaatgttgattttgaagttgactaaaaaagagtagctgattatttcaacaatggtcgtggagatgtca 21698662  T
Q  153 ccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    || ||||||| ||||||||||| || ||| || | ||   ||| |   |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21698663 ccgaatttggctctattatggacagtagtgtccatttccgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 21698762  T
Q  253 tcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||  | |||||| || ||||||||||||| ||||||||||| | |||||||||    
T  21698763 tcatgttttagctaaggcagccacatctagtactagcttccaggtgtttgatgat 21698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 11986044 - 11986322
Alignment:
Q  29 ggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatt 128  Q
    ||||||||||| |   ||||||| |||||||||||||||||||||||||||||   |||||||||||| ||  ||||||| |||||||||||  ||||||    
T  11986044 ggggaggccctggcgttacatcatgcgattcggtggattcatgaacttcaactcttaaatgttgatttcgagattgactcaaaaagagtagctaattatt 11986143  T
Q  129 tcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttat 228  Q
    |||||||||| |||||  |||||||| | |||||||| ||||||||||| ||| || |  ||   || ||  ||||||||||||||||||||||||||||    
T  11986144 tcaacaatggtcgtggaaatgtcaccgagtttggttccattatggatagtagtgtccaactttgtaacacttatttaacaaactctcatgtcgagtttat 11986243  T
Q  229 taggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||  || |||||||| ||| ||||||||| || |||||| |||||| ||| ||||||| |||||||||||    
T  11986244 taggaggcaagtaaacgaggttgcacatgctctagctaaggcagccacgtctagtactaacttccaggtctttgatgat 11986322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 30063879 - 30063625
Alignment:
Q  53 gcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtca 152  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| | ||||  |||| |||||| ||||||||||||||||| || || |||||||    
T  30063879 gcgattcggtggattcatgaacttcaacttttaaatgttgattttgaaatggactaaaaaatagtagctgattatttcaacaatggtcgcggagatgtca 30063780  T
Q  153 ccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    |||||||||| ||||| ||||| || ||| || | ||   ||| |   |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30063779 ccaaatttggatctatcatggacagtagtgtccaattctgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 30063680  T
Q  253 tcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||  | ||||||    ||||||||| ||| ||| ||||||| | |||||||||    
T  30063679 tcatgttttagctaaaacagccacatccagtactaccttccaggtgtttgatgat 30063625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 10515983 - 10516261
Alignment:
Q  29 ggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatt 128  Q
    ||||||||||| ||  ||||||| || ||||||||||| |||||||||||||| | |||||||||||| || |||| ||| ||||| ||||| |||||||    
T  10515983 ggggaggccctgggattacatcatgcaattcggtggatacatgaacttcaactcataaatgttgatttcgaggttgtctcaaaaagtgtagctgattatt 10516082  T
Q  129 tcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttat 228  Q
    ||||||| || ||||| ||||||||||| ||||||| |||||||||||| || ||| | ||    |  ||  ||||||||||||||||||||||||||||    
T  10516083 tcaacaaaggtcgtggagatgtcaccaagtttggttgtattatggatagtagcatccaattatgtagcacttatttaacaaactctcatgtcgagtttat 10516182  T
Q  229 taggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||| |||  ||||||||||  |||||| || ||| || | ||||||||| | |||||||| || |||||||||||    
T  10516183 taggaggtaaggaaatgaggttgtgcatactttaactaaggcaaccacatctaatactagcttctaggtctttgatgat 10516261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 307
Target Start/End: Complemental strand, 1638389 - 1638228
Alignment:
Q  146 gatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatg 245  Q
    ||||||||| ||||||| |||||||||||||| |||||  ||||    || |   |||||||||||||||||||||| ||||||||||||||||| ||||    
T  1638389 gatgtcaccgaatttggctctattatggatagtagtatacacttatgtaacaattatttaacaaactctcatgtcgaatttattaggaggcaagcaaatg 1638290  T
Q  246 aggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||||| |||||| |||||| |  ||||||||||||| |||||||||| |||| |||||||    
T  1638289 aggttgcacatactttagctaagacagccacatctagtactagcttccaaatctatgatgat 1638228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 1641360 - 1641256
Alignment:
Q  203 ttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttg 302  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||| |||||| |  ||||||||||||| |||||||||| |||| ||    
T  1641360 ttaacaaacgctcatgtcgaatttattaggaggcaagcaaatgaggttgcacatactttagctaagacagccacatctagtactagcttccaaatctatg 1641261  T
Q  303 atgat 307  Q
    |||||    
T  1641260 atgat 1641256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 306
Target Start/End: Original strand, 15950658 - 15950906
Alignment:
Q  58 tcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaa 157  Q
    |||||||||  |||||||||| || ||||||||||||||||| || || || |||| |||||| |||||||||||||| |   | || |||  |||| ||    
T  15950658 tcggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattatttcaacaaggcaagaggagataacaccgaa 15950757  T
Q  158 tttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcata 257  Q
    ||||| || |||||||| |  | |||| | |||   || | |  |||||||||||||||||||||||||| |||||||||||| |||||||||||||||     
T  15950758 tttgggtccattatggagaatactatccagttttgtaatatctttttaacaaactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatg 15950857  T
Q  258 ctctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
       |||||| || ||||||||   || |||||||||| |||||||||||    
T  15950858 aattagctaaggcagccacattaggtcctagcttccacatctttgatga 15950906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 7090627 - 7090441
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatt 159  Q
    ||||||||||||||||||  || ||||||||||||||||| ||||| |  |||| |||||| |||| ||| ||||| ||||  || ||| ||||| | ||    
T  7090627 ggtggattcatgaacttcggctcacaaatgttgattttgaggttgattaaaaaatagtagctgattcttttaacaaaggcctgggagatatcaccgagtt 7090528  T
Q  160 tggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatga 246  Q
    |||||| ||||||||||  |||||| | || |  ||  |  ||||||||||||||||||| |||||||||||||||||||| |||||    
T  7090527 tggttccattatggatactagtatccaattcagtaaatcatatttaacaaactctcatgttgagtttattaggaggcaagcaaatga 7090441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 30148022 - 30148063
Alignment:
Q  202 tttaacaaactctcatgtcgagtttattaggaggcaagcgaa 243  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30148022 tttaacaaactctcatgtcgagtttattaggaggcaagcgaa 30148063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 256
Target Start/End: Original strand, 13434209 - 13434409
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||| |  |||||||||| || |||||||||||||||||  | || || |||| |||||  |||||||| ||||| ||| | || |||  || ||    
T  13434209 attcggtggttcaatgaacttcagctcacaaatgttgattttgagatagattcgaaaacagtagttgattattttaacaaaggcagaggagatagcatca 13434308  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    ||||||  || ||||||||||  |||||| | ||| | ||   |  |||||||||||||||||| |||||||||||||| ||| | || ||| |||||||    
T  13434309 aatttgaatcaattatggataatagtatccagttttctaatttctttttaacaaactctcatgttgagtttattaggagacaatcaaaagagattgctca 13434408  T
Q  256 t 256  Q
    |    
T  13434409 t 13434409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 8942161 - 8942210
Alignment:
Q  203 ttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    ||||||||||||  ||||||||||| |||||||||| |||||||||||||    
T  8942161 ttaacaaactctattgtcgagtttactaggaggcaaccgaatgaggttgc 8942210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 15923756 - 15923709
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgact 107  Q
    ||||||| |||||||||||||| ||||||||||||||| | |||||||    
T  15923756 ggtggatacatgaacttcaactcacaaatgttgattttaaggttgact 15923709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 19047097 - 19047144
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    |||||||||||||||||||| |||||||||||| |||| ||| |||||    
T  19047097 aaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctca 19047144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 6047326 - 6047379
Alignment:
Q  203 ttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcata 257  Q
    ||||||||||||||||| |  ||||||| |||||||||||||| |||||||||||    
T  6047326 ttaacaaactctcatgttgcatttattaagaggcaagcgaatg-ggttgctcata 6047379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 17812263 - 17812320
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  17812263 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 17812320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 33132324 - 33132267
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| ||||||||||||||||  || |||||||  |||||||    
T  33132324 gagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcggccacat 33132267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 11731633 - 11731581
Alignment:
Q  222 agtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagcc 274  Q
    ||||| ||||||||||||||||   ||||||||||||| ||||||||| ||||    
T  11731633 agtttgttaggaggcaagcgaacatggttgctcatactttagctagggcagcc 11731581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 23631446 - 23631562
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatt 159  Q
    |||||||  ||||||||||||| |||||||| |||||||| || || || |||| |||||  |||||||| ||||| ||| | |  |||  |||| ||||    
T  23631446 ggtggatcaatgaacttcaactcacaaatgtcgattttgaggtagattcgaaaacagtagttgattattttaacaaaggcagcgaagatagcaccgaatt 23631545  T
Q  160 tggttctattatggata 176  Q
    ||| || ||||||||||    
T  23631546 tggatccattatggata 23631562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 19609369 - 19609115
Alignment:
Q  53 gcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtca 152  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  19609369 gcgattcggtggattcatgaacttcaacttttaaatgttgattttgaagttgactcaaaaagagtagctgattatttcaacaatggtcgtggagatgtca 19609270  T
Q  153 ccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    |  ||||||| ||||||||||| || | | || | ||   ||| |   |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19609269 ctgaatttggctctattatggacagtaatgtccaattctgcaataattatttaacaaactctcatgtcgagtttattaggaggcaagcaaatgaggttgc 19609170  T
Q  253 tcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||  | ||||||  |||||||||||||||  |||||||||| | |||||||||    
T  19609169 tcatgttttagctaaagtagccacatctagtattagcttccaggtgtttgatgat 19609115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 48 - 307
Target Start/End: Original strand, 20705964 - 20706223
Alignment:
Q  48 atcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtga 147  Q
    |||||||||||| |||||| ||||||||||||||  ||||||||||||| || || ||||||||||||||||| | ||||||||||||||| ||||| ||    
T  20705964 atcacgcgattcagtggatacatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagagtagctggttatttcaacaatggtcgtggaga 20706063  T
Q  148 tgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgag 247  Q
    ||||||| | || || ||||| |||||||| ||| || | ||    || ||| ||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  20706064 tgtcaccgagttcggctctatcatggatagtagtgtccaattctgtaacaccaatttatcaaactctcatgtcgagtttattagaaggcaagcaaatgag 20706163  T
Q  248 gttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||| ||| || |||||| || ||||||||||||| ||||||||||| |||||||||||    
T  20706164 gttgcacatgctttagctaaggcagccacatctagtactagcttccaggtctttgatgat 20706223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 306
Target Start/End: Original strand, 8724566 - 8724816
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||||| |||||| |||||||   |||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||| |||||||||     
T  8724566 attcggtggatccatgaatttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcagattatttcaacaaaggtcgtggagatgtcaccg 8724665  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    ||||||||||||| ||||| || || ||  | ||      | | | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  8724666 aatttggttctataatggacagtagcattcatttctgtcggtcacttttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcaca 8724765  T
Q  256 tactctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
    || |||||||| || |||||||||||||||||||||||  |||||||||||    
T  8724766 taatctagctaaggcagccacatctagttctagcttccgtatctttgatga 8724816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 306
Target Start/End: Complemental strand, 13065681 - 13065431
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||| |||| |||||||||     
T  13065681 attcggtggatccatgaacttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcggattatttcaacaaaggcagtggagatgtcaccg 13065582  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    |||||||||| || ||||| || || ||| | ||      | |   |||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  13065581 aatttggttccataatggacagtagcatccatttctgtcggtcatttttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggttgcaca 13065482  T
Q  256 tactctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
    ||||||||||| || |||||||||||||||||||||||  |||||||||||    
T  13065481 tactctagctaaggcagccacatctagttctagcttccgtatctttgatga 13065431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 11619415 - 11619131
Alignment:
Q  23 gatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcag 122  Q
    ||||| |||||||| |  |||||| |||| || ||||||||||| || || ||||||||| |||||||||| || || |||||||||||||||||||| |    
T  11619415 gatgttggggaggctcagggtctatatcatgcaattcggtggatacaagagcttcaactttcaaatgttgacttcgaggttgactctaaaagagtagccg 11619316  T
Q  123 attatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcga 222  Q
    ||||||||||||| || ||||| ||||||||| |||||||||||||| ||||||||| |||| | ||    |  |   ||||||||||||||||||||||    
T  11619315 attatttcaacaaaggtcgtggagatgtcaccgaatttggttctattgtggatagcaatatccaattatgtagaaattatttaacaaactctcatgtcga 11619216  T
Q  223 gtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||| ||||||||||||| ||| |  ||| || || ||||||||||||| ||||||||||  |||||||||||    
T  11619215 gtttattaggaggcaaacgaatgaggttgcgcatgcattagttaaggcagccacatctagtactagcttccatgtctttgatgat 11619131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 307
Target Start/End: Original strand, 20587488 - 20587744
Alignment:
Q  48 atcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtga 147  Q
    ||||||||||||||   || ||||||||||||||  ||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||||| ||    
T  20587488 atcacgcgattcgg---atccatgaacttcaactctcaaatgttgatttcgaggtagactctaaaagagtagctgattatttcaacaatggtcgtggaga 20587584  T
Q  148 tgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgag 247  Q
    ||||||| | || || ||||| |||||||| ||| || | ||    || ||| ||||| ||||||||||||||||||||||||||||| |||  ||||||    
T  20587585 tgtcaccgagttcggctctatcatggatagtagtgtccaattctgtaacaccaatttatcaaactctcatgtcgagtttattaggaggtaagaaaatgag 20587684  T
Q  248 gttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||| ||| || |||||| || ||||||||||||| ||| ||||||| |||||||||||    
T  20587685 gttgcacatgctttagctaaggcagccacatctagtactaccttccaggtctttgatgat 20587744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 60 - 307
Target Start/End: Original strand, 42765139 - 42765386
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatt 159  Q
    ||||||| || ||||||||| | |||||||||||||| || |||||||||||||||||||| |||||||||||||| |||| ||| ||| ||| | ||||    
T  42765139 ggtggatacaagaacttcaattaacaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcatcgaatt 42765238  T
Q  160 tggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatact 259  Q
     || || ||||||||||  |||||| | |      | |   | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||    
T  42765239 cggctccattatggataagagtatccaatggtgtcacaattacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacact 42765338  T
Q  260 ctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||| | || ||||||||||||| |||||||||||||||||||||||    
T  42765339 ctagccaaggcagccacatctagtactagcttccagatctttgatgat 42765386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 60 - 307
Target Start/End: Complemental strand, 36962181 - 36961934
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatt 159  Q
    ||||||| || ||||||||| | |||||||||||||| || |||||||||||||||||||| |||||||||||||| |||| ||| ||| ||||| ||||    
T  36962181 ggtggatacaagaacttcaattaacaaatgttgatttcgaggttgactctaaaagagtagctgattatttcaacaaaggccatggagatatcaccgaatt 36962082  T
Q  160 tggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatact 259  Q
     || || ||||||||||  |||||| | |      | |   | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||    
T  36962081 cggctccattatggataagagtatccaatggtgtcacagttacttaacaaactctcatgttgagtttattaggaggcaagcaaatgaggttgctcacact 36961982  T
Q  260 ctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||| | || |||| |||||||| ||||||||||||| |||||||||    
T  36961981 ctagccaaggcagccgcatctagtactagcttccagatttttgatgat 36961934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 18521642 - 18521842
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||| | |||| |||||| || ||||||||||| ||||| ||||| |  |||| ||||||  ||||||||||||| ||  | || ||| ||||      
T  18521642 attcggtgggtacatggacttcagctcacaaatgttgactttgaggttgattagaaaaaagtagctaattatttcaacaaaggttgaggagatatcactg 18521741  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    |||||||||| |||||  |||| |||||| | ||    ||  || |||||||||| ||||||||  |||||||||  |||||||| ||||||||||| ||    
T  18521742 aatttggttc-attataaatagtagtatccaattctgtaatccctatttaacaaattctcatgtgaagtttattacaaggcaagcaaatgaggttgccca 18521840  T
Q  256 ta 257  Q
    ||    
T  18521841 ta 18521842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 13559983 - 13560034
Alignment:
Q  206 acaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcata 257  Q
    ||||||||| |||| |||||||||||||||||||  |||||||||| |||||    
T  13559983 acaaactctaatgttgagtttattaggaggcaagtcaatgaggttgttcata 13560034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 21708484 - 21708542
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagcta 266  Q
    |||||||||||| |||||| |  |||||||||| |||||||||||||||| | ||||||    
T  21708484 aaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctcatagtttagcta 21708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 11123618 - 11123675
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacat 278  Q
    |||||||||||||| ||||| |||||||||| ||||| ||| |||||||  |||||||    
T  11123618 gagtttattaggagacaagcaaatgaggttgttcatagtcttgctagggcggccacat 11123675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 31291570 - 31291619
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttga 105  Q
    |||| |||||| ||||||||||| || ||||||||||||||||| |||||    
T  31291570 attcagtggatacatgaacttcagctcacaaatgttgattttgaggttga 31291619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 11776 - 11492
Alignment:
Q  23 gatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcag 122  Q
    ||||| ||||||||||| | | || |||| |||||||||||||| ||||||||||||||  ||||||||||||| || |||||||| ||||||||||| |    
T  11776 gatgttggggaggccctggctttaaatcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctg 11677  T
Q  123 attatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcga 222  Q
    ||||||||||||| ||  |||| ||||||||| | ||||| || ||||||| ||| ||| |   |||    ||     ||||||||||||||||||||||    
T  11676 attatttcaacaaaggtagtggagatgtcaccgagtttggctccattatgggtagtagtttaagcttctgtaatgaatatttaacaaactctcatgtcga 11577  T
Q  223 gtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||||| |||||||||||||||||| |||||| || |||||||| |||| ||||||||||| |||||||||||    
T  11576 gtttattaggaggcaagcaaatgaggttgctcatactttagctaaggcagccacatgtagtactagcttccaggtctttgatgat 11492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 28162200 - 28161916
Alignment:
Q  23 gatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcag 122  Q
    ||||| ||||||||||| | | || |||| |||||||||||||| ||||||||||||||  ||||||||||||| || |||||||| ||||||||||| |    
T  28162200 gatgttggggaggccctggctttaaatcatgcgattcggtggatacatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctg 28162101  T
Q  123 attatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcga 222  Q
    ||||||||||||| || ||||| ||||||||| | ||||| || ||||||||||| ||| |   |||    ||     ||||||||||||||||||||||    
T  28162100 attatttcaacaaaggtcgtggagatgtcaccgagtttggctccattatggatagtagtttaagcttctgtaatgtttatttaacaaactctcatgtcga 28162001  T
Q  223 gtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||||| ||||||||||| |||||  |||||| |  |||||||| |||| ||||||||||| |||||||||||    
T  28162000 gtttattaggaggcaagcaaatgaggttgcacatacgttagctaagacagccacatgtagtactagcttccaggtctttgatgat 28161916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 307
Target Start/End: Complemental strand, 25732558 - 25732299
Alignment:
Q  48 atcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtga 147  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||| || |||||||| ||||||||||| |||||||||||||| || ||||| ||    
T  25732558 atcatgcgattcggtggattcatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagctgattatttcaacaaaggtcgtggaga 25732459  T
Q  148 tgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgag 247  Q
    | ||||| | ||||| || ||||||||||| ||| |   |||    ||     ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  25732458 tatcaccgagtttggctccattatggatagtagtttaagcttctgtaatgaatatttaacaaactctcatgtcgagtttattaggaggtaagcaaatgag 25732359  T
Q  248 gttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    ||||| ||| || |||||| || | |||||| |||| ||||||||||| |||||||||||    
T  25732358 gttgcacatgctttagctaaggcaaccacatgtagtactagcttccaggtctttgatgat 25732299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 7995014 - 7995291
Alignment:
Q  29 ggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatt 128  Q
    ||||||||||| |||||| ||||  | |||||||||||  |||||||||||||| |||| ||||||||| | ||||| || ||||||||||| |||||||    
T  7995014 ggggaggccctgggtctatatcatccaattcggtggataaatgaacttcaacttgcaaacgttgatttttaggttgattcgaaaagagtagctgattatt 7995113  T
Q  129 tcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttat 228  Q
    ||||||| |  || || ||||||| | |||||||||| ||||||||||| |||||| | |||   |   || ||||||||||||||||||||||||||||    
T  7995114 tcaacaaagatcgaggagatgtcatcgaatttggttccattatggatagtagtatccaattttatagttcctatttaacaaactctcatgtcgagtttat 7995213  T
Q  229 taggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
    || || |||| | ||||| ||||| |||    |||||| || ||||||||||| |  |||||| |  |||||||||||    
T  7995214 tatgaagcaaacaaatgaagttgcacatgaattagctaaggcagccacatctaatattagctttcgtatctttgatga 7995291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 3989378 - 3989601
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||||| ||| |||||||||| | |||||||||||||||  |||| || |||| |||||| |||||||| || ||  | ||||| ||| ||||||    
T  3989378 attcggtggatacataaacttcaactcataaatgttgattttgagattgattcgaaaatagtagctgattattttaataaaagtcgtggagatatcacca 3989477  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    | ||| |||| ||||||||||| |||||| | ||    ||  || ||||||||||||||||||| |||||||||||  | ||||| ||||||||||| ||    
T  3989478 agtttcgttccattatggatagtagtatccaattatgtaattcctatttaacaaactctcatgtggagtttattagacgacaagcaaatgaggttgccca 3989577  T
Q  256 tactctagctagggtagccacatc 279  Q
    ||   || ||| ||||||||||||    
T  3989578 taaattatctaaggtagccacatc 3989601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 12784328 - 12784177
Alignment:
Q  32 gaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttca 131  Q
    |||||||| |||||| |||| || ||||| ||||| ||| || |||| ||   |||||||| |||||| ||||| || ||||||||||| |||||||| |    
T  12784328 gaggccctgggtctatatcatgcaattcgatggatacataaatttcagctcgtaaatgttgcttttgaggttgattcgaaaagagtagctgattattt-a 12784230  T
Q  132 acaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatc 184  Q
    |||| || || || ||||||||| |||| ||||| ||||||||||| ||||||    
T  12784229 acaaaggtcgaggagatgtcaccgaattgggttccattatggatagtagtatc 12784177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 12246943 - 12247006
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtag 119  Q
    ||||||||||||||||||||||| || |||||||||||||||||  |||| || ||||||||||    
T  12246943 attcggtggattcatgaacttcagctcacaaatgttgattttgagattgattcaaaaagagtag 12247006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 249
Target Start/End: Original strand, 25133033 - 25133221
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatt 159  Q
    ||||||| ||||||| | |||| | |||||||| |||||||||||| || |||| ||||||  ||||||| ||||| ||  | || |||||||   | ||    
T  25133033 ggtggatccatgaacat-aactcataaatgttggttttgaagttgattcgaaaatagtagctcattattttaacaaaggtaggggagatgtcagagagtt 25133131  T
Q  160 tggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggt 249  Q
    |||||| ||||||||||| |||||| | ||    ||  || |||||| |||||||||| | |||||||||||||||||||  ||||||||    
T  25133132 tggttccattatggatagtagtatccaattatgtaattcctatttaataaactctcatattgagtttattaggaggcaagaaaatgaggt 25133221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 26440817 - 26440898
Alignment:
Q  209 aactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagct 290  Q
    ||||||||||||||||| | |||||||||||| |||| ||||||||||    |||||||||||||| |||||| | ||||||    
T  26440817 aactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccccatctaatgctagct 26440898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 39533709 - 39533753
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgc 252  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||    
T  39533709 aaactctcatgttgagtttattaggaggcaagcgaatgtggttgc 39533753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 12189370 - 12189415
Alignment:
Q  200 catttaacaaactctcatgtcgagtttattaggaggcaagcgaatg 245  Q
    |||||||||| ||||| ||| |||||||||| ||||||||||||||    
T  12189370 catttaacaatctctcgtgtggagtttattatgaggcaagcgaatg 12189415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 12433798 - 12433843
Alignment:
Q  200 catttaacaaactctcatgtcgagtttattaggaggcaagcgaatg 245  Q
    |||||||||| ||||| ||| |||||||||| ||||||||||||||    
T  12433798 catttaacaatctctcgtgtggagtttattatgaggcaagcgaatg 12433843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 14848462 - 14848426
Alignment:
Q  221 gagtttattaggaggcaagcgaatgaggttgctcata 257  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  14848462 gagtttattaggagacaagcaaatgaggttgctcata 14848426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 306
Target Start/End: Complemental strand, 2447 - 2197
Alignment:
Q  56 attcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcacca 155  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||| |||| |||||||||     
T  2447 attcggtggatccatgaacttcaactcgaaaatgttgattttgaagttgactcgaaacgagtagcggattatttcaacaaaggcagtggagatgtcaccg 2348  T
Q  156 aatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctca 255  Q
    |||||||||| || ||||| || || ||| | ||      | |   |||||||||||||||||||||||||| |||||||||||||||||||||| | ||    
T  2347 aatttggttccataatggacagtagcatccatttctgtcggtcatttttaacaaactctcatgtcgagtttactaggaggcaagcgaatgaggtttcaca 2248  T
Q  256 tactctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
    ||||||||||| || ||||||||| |||||||||||||  |||||||||||    
T  2247 tactctagctaaggcagccacatccagttctagcttccgtatctttgatga 2197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 734 - 1020
Alignment:
Q  21 ttgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagc 120  Q
    |||||||||||||| | || | | || |||| ||||||||||||| |||||||||||||||  |||||||| |||| || ||||| || |||||||||||    
T  734 ttgatgtaggggagactctggctttaaatcatgcgattcggtggactcatgaacttcaactctcaaatgttaatttcgaggttgattcaaaaagagtagc 833  T
Q  121 agattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtc 220  Q
      ||||||||||||| || ||||| ||||||||| | |||||||| ||||||||||  ||  || | ||    ||     ||||||||||||||||||||    
T  834 taattatttcaacaaaggtcgtggagatgtcaccgagtttggttccattatggataatagcttcaatttctgtaatgattatttaacaaactctcatgtc 933  T
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||||||| |||||||||||||||||  |||||| || |||||||| |||| |||| |||||  |||||||||||    
T  934 gagtttattaggaggcaagcaaatgaggttgctcataccttagctaaggcagccacatgtagtactagtttccaagtctttgatgat 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 14269 - 13981
Alignment:
Q  21 ttgatgtaggggaggccctaggtctacatcacgcgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagc 120  Q
    ||||| |||||||||| || | | || |||| ||||||| |||||||||||||||||||||  ||||||||||||| || |||||||| |||||||||||    
T  14269 ttgatttaggggaggctctggctttaaatcatgcgattcagtggattcatgaacttcaactctcaaatgttgatttcgaggttgactcaaaaagagtagc 14170  T
Q  121 agattatttcaacaatggccgtggtgatgtcaccaaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtc 220  Q
     |||||||||||||| || ||||| ||||||||| | ||||| || ||||||||||  ||| |  | ||    ||     | ||||||||||||||||||    
T  14169 tgattatttcaacaaaggtcgtggagatgtcaccgagtttggatccattatggataatagtttaaatttctgtaatgattacttaacaaactctcatgtc 14070  T
Q  221 gagtttattaggaggcaagcgaatgaggttgctcatac--tctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||||||||||||||||  |||||||||||||||||  | |||||| || |||||||| |||| |||||||| |  |||||||||||    
T  14069 gagtttattaggaggcaagaaaatgaggttgctcataccttttagctaaggcagccacatgtagtactagcttcaaagtctttgatgat 13981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 307
Target Start/End: Complemental strand, 14666 - 14414
Alignment:
Q  54 cgattcggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcac 153  Q
    |||| |||||||| |||||||||||| |||||||||||||||| || |||||||| |||| ||| ||  ||||||||||||| || ||||| |||||| |    
T  14666 cgatgcggtggatacatgaacttcaatttacaaatgttgatttcgaggttgactcaaaaatagttgctaattatttcaacaaaggtcgtggagatgtc-c 14568  T
Q  154 caaatttggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgct 253  Q
    | ||||||||| ||| || ||||  || ||| | ||    || |   |||||||||||||||||||||| ||||||||||||||||| |||||||||||     
T  14567 cgaatttggttttatcattgataatagcatccatttctgtaacaattatttaacaaactctcatgtcgaatttattaggaggcaagcaaatgaggttgca 14468  T
Q  254 catactctagctagggtagccacatctagttctagcttccagatctttgatgat 307  Q
    |||||| |||||| |  |  |||||||||| ||| |||| | |||||| |||||    
T  14467 catactttagctaagacaatcacatctagtactaacttcaatatctttaatgat 14414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 306
Target Start/End: Original strand, 52536 - 52782
Alignment:
Q  60 ggtggattcatgaacttcaacttacaaatgttgattttgaagttgactctaaaagagtagcagattatttcaacaatggccgtggtgatgtcaccaaatt 159  Q
    |||||||  |||||||||| || ||||||||||||||||| || || || |||| |||||| ||||||||  |||| | | | || |||  |||| ||||    
T  52536 ggtggatcaatgaacttcagctcacaaatgttgattttgaggtagattcgaaaacagtagctgattattttcacaaagccagaggagataacaccgaatt 52635  T
Q  160 tggttctattatggatagcagtatctactttaccaagacccatttaacaaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatact 259  Q
    ||| || |||||||| |  | |||| | |||  ||| |    ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||       
T  52636 tggatccattatggagaatactatccagttttgcaatatatttttaacaaactctcatgtcgagtttattaggaggcaagcaaatgacgttgttcatgag 52735  T
Q  260 ctagctagggtagccacatctagttctagcttccagatctttgatga 306  Q
     |||||| || ||||||||   || |||||||||| |||||||||||    
T  52736 ttagctaaggcagccacattatgtcctagcttccacatctttgatga 52782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 5426 - 5368
Alignment:
Q  208 aaactctcatgtcgagtttattaggaggcaagcgaatgaggttgctcatactctagcta 266  Q
    |||||||||||| |||||| |  |||||||||| |||||||||||||||| | ||||||    
T  5426 aaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctcatagtttagcta 5368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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