View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4664_low_9 (Length: 236)

Name: NF4664_low_9
Description: NF4664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4664_low_9
NF4664_low_9
[»] chr7 (11 HSPs)
chr7 (1-232)||(39622125-39622356)
chr7 (21-232)||(39547529-39547740)
chr7 (42-232)||(39365955-39366145)
chr7 (21-232)||(39564308-39564519)
chr7 (21-232)||(39538071-39538282)
chr7 (42-232)||(39353445-39353635)
chr7 (21-232)||(39338581-39338792)
chr7 (53-232)||(39589357-39589536)
chr7 (53-232)||(39575119-39575298)
chr7 (85-232)||(1084865-1085013)
chr7 (60-141)||(42133156-42133237)
[»] chr2 (3 HSPs)
chr2 (21-229)||(44223209-44223417)
chr2 (21-141)||(44211135-44211255)
chr2 (21-141)||(44234119-44234239)
[»] chr4 (2 HSPs)
chr4 (33-163)||(2877126-2877256)
chr4 (80-127)||(46451752-46451799)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 39622356 - 39622125
Alignment:
Q  1 tcggtgaaaggttgaacctattgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactct 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622356 tcggggaaaggttgaacctattgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactct 39622257  T
Q  101 gatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622256 gatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgt 39622157  T
Q  201 ggatactgtgaacaaaattatatccattctcc 232  Q
    ||||||||||||||||||||||||||||||||    
T  39622156 ggatactgtgaacaaaattatatccattctcc 39622125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 39547740 - 39547529
Alignment:
Q  21 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 120  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| |    
T  39547740 ttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctggta 39547641  T
Q  121 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 220  Q
    |||||||  | |||||||||||||||| ||||||||| ||||||||| |||||||||| || |||||||||||| |||  ||||||||||| |||| | |    
T  39547640 gaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactga 39547541  T
Q  221 tatccattctcc 232  Q
    ||||||||||||    
T  39547540 tatccattctcc 39547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 39365955 - 39366145
Alignment:
Q  42 ttcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 141  Q
    |||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||| ||||||||  | ||||||||||    
T  39365955 ttcagaccaggtgttctcacggctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattg 39366054  T
Q  142 gtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 232  Q
    |||||| ||||||||| ||||||||| |||||||||| ||||||||||||||| ||| ||||||||| || |||| | |||||||||||||    
T  39366055 gtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcgagcaaactgatatccattctcc 39366145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 39564519 - 39564308
Alignment:
Q  21 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 120  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||  |||| |    
T  39564519 ttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggta 39564420  T
Q  121 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 220  Q
    | |||||| |||||||||||||||||| |||||||||||| |||| | |||||||||| ||||||||||||||| ||| ||| |||||||| |||||| |    
T  39564419 ggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatga 39564320  T
Q  221 tatccattctcc 232  Q
    |||||| |||||    
T  39564319 tatccactctcc 39564308  T

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Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 39538282 - 39538071
Alignment:
Q  21 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 120  Q
    ||||| ||| |||||||  | |||||||| | ||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||| ||  |||| |    
T  39538282 ttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaaacaactctgatggatgtgctttctggta 39538183  T
Q  121 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 220  Q
    |||||||  | |||||||||||||||| ||||||||||||||||||| |||||||||| || |||||||||||| |||  ||||||||||| |||| | |    
T  39538182 gaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaactga 39538083  T
Q  221 tatccattctcc 232  Q
    ||||||||||||    
T  39538082 tatccattctcc 39538071  T

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Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 39353445 - 39353635
Alignment:
Q  42 ttcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 141  Q
    |||||||| | ||||||||| |||||||||||  | ||||||||||| ||||||||||| |||||||| ||  |||| ||||||||| | ||||||||||    
T  39353445 ttcagaccaggtgttctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgctttctggtagaaaaaccggtggatatattg 39353544  T
Q  142 gtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 232  Q
    |||||| |||||||||||| |||||| |||| ||||| ||||||||||||||| ||| |||||||||||| |||| | |||||||||||||    
T  39353545 gtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtgagcaaactgatatccattctcc 39353635  T

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Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 39338581 - 39338792
Alignment:
Q  21 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 120  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| |||||||||||  | || |||||||| |||||||||||||||||||| ||  |||| |    
T  39338581 ttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctgatggatgtgctttctggta 39338680  T
Q  121 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 220  Q
    |||||||  | |||||||||||||||| ||||| |||||| |||| | |||||||||| ||||||||||||||| ||| |||||||||||| |||| | |    
T  39338681 gaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtgagcaaactga 39338780  T
Q  221 tatccattctcc 232  Q
    ||||||||||||    
T  39338781 tatccattctcc 39338792  T

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Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 39589536 - 39589357
Alignment:
Q  53 tgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatc 152  Q
    ||||||||| ||| | ||||| || || |||||||| ||||| ||| || ||||||| ||  |||| ||||||||  | |||||||||||||||||||||    
T  39589536 tgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttgttggatgtgctttctggtagaaaaactggtggatatattggtgggaccatc 39589437  T
Q  153 acaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 232  Q
    ||||||||||| ||| | |||||||| ||||| ||||||||| ||| |||||||||||| |||||| ||||||| |||||    
T  39589436 acaatttctggatatcctaagaagcaagaaacatttgcaagaatttctggatactgtgagcaaaatgatatccactctcc 39589357  T

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Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 39575298 - 39575119
Alignment:
Q  53 tgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatc 152  Q
    ||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||   | ||||||||| |||||| ||||    
T  39575298 tgttctcactgcacttatgggtgtcactggtgctggcaaaacaactttgatggatgtacttgctggtaggaaaagtgggggatatattagtgggaacatc 39575199  T
Q  153 acaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 232  Q
    ||| |||| ||  || | || ||||| ||||||||||||||| |||  ||||||||||| |||||| |||| || |||||    
T  39575198 acagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcc 39575119  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 1085013 - 1084865
Alignment:
Q  85 ctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaag--aagcaggaa 182  Q
    |||||||||||||| |||||||||| ||  |||| ||||||||    |||||||||||||||| ||||| ||||||||||||| || ||  ||||| |||    
T  1085013 ctggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaa 1084915  T
Q  183 acctttgcaagagtttgtggatactgtgaacaaaattatatccattctcc 232  Q
    || ||| ||||| ||| |||||||||||| ||||   |||||||||||||    
T  1084914 acatttacaagaatttctggatactgtgagcaaatagatatccattctcc 1084865  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 42133237 - 42133156
Alignment:
Q  60 acagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 141  Q
    ||||| || |||||||| | ||||||||| || ||||| || ||||||||| |||| |||||||||||  | ||||||||||    
T  42133237 acagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattg 42133156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 44223417 - 44223209
Alignment:
Q  21 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 120  Q
    ||||| ||||| |||||| ||||||| || | ||||||||||||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44223417 ttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44223318  T
Q  121 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 220  Q
    | |||||  | |||||||||| |||   |||||   ||||||| ||  | || ||||| ||||| ||||| ||| ||| ||| |||||||| || ||| |    
T  44223317 ggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaatga 44223218  T
Q  221 tatccattc 229  Q
    |||||||||    
T  44223217 tatccattc 44223209  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 44211255 - 44211135
Alignment:
Q  21 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 120  Q
    ||||| ||||| || ||| ||||||| || | ||||||||||||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44211255 ttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44211156  T
Q  121 gaaaaaccagaggatatattg 141  Q
    | |||||  | ||||||||||    
T  44211155 ggaaaacaggtggatatattg 44211135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 44234239 - 44234119
Alignment:
Q  21 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 120  Q
    ||||| ||||| |||||  ||||||| || | ||| || || ||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| |    
T  44234239 ttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta 44234140  T
Q  121 gaaaaaccagaggatatattg 141  Q
    | |||||  | ||||||||||    
T  44234139 ggaaaacaggtggatatattg 44234119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 2877126 - 2877256
Alignment:
Q  33 agtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagag 132  Q
    |||||| |||| ||||| | ||||||||||||| |||||||||| | ||| ||||| ||||| ||| ||||||||||| | ||||| || ||||| || |    
T  2877126 agtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctggtaggaaaactagtg 2877225  T
Q  133 gatatattggtgggaccatcacaatttctgg 163  Q
    | ||||||| ||||| ||| | |||||||||    
T  2877226 gttatattgatgggagcataaaaatttctgg 2877256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 46451752 - 46451799
Alignment:
Q  80 tggtgctggcaaaacaactctgatggatgtactagctggaagaaaaac 127  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  46451752 tggtgctgggaaaaccactctgatggatgtattagctggaagaaaaac 46451799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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