View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4665-Insertion-1 (Length: 962)
Name: NF4665-Insertion-1
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4665-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 237 - 649
Target Start/End: Complemental strand, 1783502 - 1783091
Alignment:
| Q |
237 |
cgatatatgctttcgcgcggctaaaatcagctaattttgatgaatcacaaaaattttatcattaaagtgttacaccttattgagaactattttcttttca |
336 |
Q |
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| T |
1783502 |
cgatatatgctttcgcgcggctaaaatcagctaattttgatgaatcacaaaaattttatcattaaagtgttacaccttattgaggactattttcttttca |
1783403 |
T |
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| Q |
337 |
cccaaaagaagaagttagtaaagtcttaaaaattggaatgtgaatataagannnnnnnagagtatcatgtgccataacatttgataatgttgactaaaag |
436 |
Q |
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| T |
1783402 |
cccaaaagaagaagttagtaaagtcttaaaaattggaatgtgaatataagatttttt-agagtatcatgtgccataacatttgataatgttgactaaaag |
1783304 |
T |
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| Q |
437 |
agataccttgaactaaattttattttattttaaattagtcatatattcaaaatatgcagattttggagctaggcattgtgttacattcagtcattttagg |
536 |
Q |
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| T |
1783303 |
agataccttgaactaaattttattttattttaaattagtcatatattcaaaatatgcagattttggagctaggcattgtgttacattcagtcattttagg |
1783204 |
T |
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| Q |
537 |
gatatctcttggggtgtcaagaagtcctaaaacaatcaaaccattggtggcagtattaacttttcatcaatgctttgaaggaataggacttggtggctgc |
636 |
Q |
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| T |
1783203 |
gatatctcttggggtgtcaagaagtcctaaaacaatcaaaccattggtggcagtattaacttttcatcaatgctttgaaggaataggacttggtggctgc |
1783104 |
T |
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| Q |
637 |
atttctcaggtac |
649 |
Q |
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| T |
1783103 |
atttctcaggtac |
1783091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 686 - 955
Target Start/End: Complemental strand, 1783055 - 1782787
Alignment:
| Q |
686 |
aggggaaacttatttatatgttagtattactttatacaatcannnnnnnn-ctctaaatgtgtgggtcagtttcactatagtccaagaacatattgaaaa |
784 |
Q |
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| T |
1783055 |
aggggaaacttatttatatgttagtattactttatacaatcatttttttttctctaaatgtgtgg-tcagtttcactatagtccaagaacatattgaaaa |
1782957 |
T |
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| Q |
785 |
tacaaaagttcattaagtgaatcttgttagaaaagcaactccggatccaatgagatcaattacataaatcaaacaagtcataatgttctatccgtatacc |
884 |
Q |
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| T |
1782956 |
tacaaaagttcattaagtgaatcttgttagaaaagcaactccggatcaaatgagatcaattacataaatcaaacaagtcataatgttctat-cgtatacc |
1782858 |
T |
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| Q |
885 |
atagtcaaaagaataaagatacaaaaagaaacgccgtcaatgaacctaccatgtttggtaacgaagtttgg |
955 |
Q |
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| T |
1782857 |
atagtcaaaagaataaagatacaaaaagaaacgcagccaatgaacatacaatgtttggtaatgaagtttgg |
1782787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 1783733 - 1783577
Alignment:
| Q |
8 |
ataatggcagtagtcatgttcataatttttcaattgcatcagatagattagattcaacaaatcgcctccggtatactatagtttctcaggtaacttaccc |
107 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1783733 |
ataatggtagtagtcatgttcataatttttcaattgcatcagatagattagattcaacaaatcgcctccggtatactatagtttctcaggtaactcaccc |
1783634 |
T |
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| Q |
108 |
gttctattatcttgtctataatatgatgatataaagttaactagtgtcaaactcgcg |
164 |
Q |
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| T |
1783633 |
gttctattatcttgtctataatatgatgatataaagttaataagtgtcaaactcgcg |
1783577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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