View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4665-Insertion-10 (Length: 277)
Name: NF4665-Insertion-10
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4665-Insertion-10 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 46885291 - 46885559
Alignment:
| Q |
6 |
caaatgcaacctcctcctccatttgaacagtggccggcggctatgaatgattatggtcaagggatgcaaatgcaacctcctcctccatttgaacagtggc |
105 |
Q |
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| T |
46885291 |
caaatgcaacctcctcctccatttgaacagtggccgac---tatgaatcattatggtcaagggatgcaaatgcaacctcctcctccatttgaacagtggc |
46885387 |
T |
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| Q |
106 |
cgactatgaatcattatggtcaagggatgcaaatgcaacctccgtactggccagctatgaatcaggagcatcaacaacaagaagaagcttataataataa |
205 |
Q |
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| T |
46885388 |
cgactatgaatcattatggtcaagggatgcaaatgcaacctccgtactggccagctatgaatcctgagcatcaacaacaagaagaagcttataataataa |
46885487 |
T |
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| Q |
206 |
tcaagaacattcatacttgaatatttttgatggatttccaaatcatgatcaatatatgaagatgcaacaaca |
277 |
Q |
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| T |
46885488 |
tcaagaacattcatacttgaatatttttgatggatttccgaatcatgatcaatatatgaagatgcaacaaca |
46885559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 46885228 - 46885367
Alignment:
| Q |
6 |
caaatgcaacctcctcctccatttgaacagtggccggcggctatgaatgattatggtcaagggatgcaaatgcaacctcctcctccatttgaacagtggc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46885228 |
caaatgcaacctcctcctccatttgaacagtggccgac---tatgaatcattatggtcaagggatgcaaatgcaacctcctcctccatttgaacagtggc |
46885324 |
T |
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| Q |
106 |
cgactatgaatcattatggtcaagggatgcaaatgcaacctcc |
148 |
Q |
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| T |
46885325 |
cgactatgaatcattatggtcaagggatgcaaatgcaacctcc |
46885367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 46885211 - 46885304
Alignment:
| Q |
55 |
attatggtcaagggatgcaaatgcaacctcctcctccatttgaacagtggccgactatgaatcattatggtcaagggatgcaaatgcaacctcc |
148 |
Q |
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| T |
46885211 |
attatggtcaagggatgcaaatgcaacctcctcctccatttgaacagtggccgactatgaatcattatggtcaagggatgcaaatgcaacctcc |
46885304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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