View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4665-Insertion-11 (Length: 160)
Name: NF4665-Insertion-11
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4665-Insertion-11 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 5e-82; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 5e-82
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 4651199 - 4651352
Alignment:
| Q |
7 |
ataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagttctagcatagaaaaaaccttcacgg |
106 |
Q |
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| T |
4651199 |
ataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagttctagcatagaaaaaaccttcacgg |
4651298 |
T |
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| Q |
107 |
ttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaaca |
160 |
Q |
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| T |
4651299 |
ttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaaca |
4651352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 23678983 - 23678830
Alignment:
| Q |
11 |
ggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttt----tagattgagagttctagcatagaaaaaaccttcacgg |
106 |
Q |
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| T |
23678983 |
ggaaggttagagagtgtagttttatcaatgtcaaagacccaaatgtctctaccatctttcttttagattgagagttctagcatagaaaaaaccttcacgg |
23678884 |
T |
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| Q |
107 |
ttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaaca |
160 |
Q |
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| T |
23678883 |
ttaacaaatttagagtcagctctatattggtcaccaagcatgtagtttccaaca |
23678830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 9e-19
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 4646658 - 4646793
Alignment:
| Q |
23 |
agtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagt |
122 |
Q |
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| T |
4646658 |
agtgaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaagagtctttgcatagaaataaccttcacggttaactgctttagagt |
4646757 |
T |
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| Q |
123 |
cagctctatattggtcaccaagcatatagttaccaa |
158 |
Q |
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| T |
4646758 |
cagctctatattgatcacctaacatatagttcccaa |
4646793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 23699179 - 23699049
Alignment:
| Q |
28 |
agtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagtcagct |
127 |
Q |
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| T |
23699179 |
agtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaagagtctttgcatagaaataaccttcacggttaactgctttagagtcagct |
23699080 |
T |
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| Q |
128 |
ctatattggtcaccaagcatatagttaccaa |
158 |
Q |
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| T |
23699079 |
ctatattgatcacctaacatatagttcccaa |
23699049 |
T |
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