View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4665-Insertion-3 (Length: 960)
Name: NF4665-Insertion-3
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4665-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 366 - 949
Target Start/End: Original strand, 45678072 - 45678650
Alignment:
| Q |
366 |
tttaaaggaaattaatgtaattggacccttaacactccaatagtttcacaagtatctttacaaacttnnnnnnnnnnnnnncataggctataaaattaac |
465 |
Q |
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| T |
45678072 |
tttaaaggaaattaatgtaattggacccttaacactccaatagtttcacaagtatctttacaaacttaaaaaaaaaa-----acaggctataaaattaac |
45678166 |
T |
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| Q |
466 |
tttagttccaatgcttaggttacaacttatagctctttagttccaactcgatgttacttaaccaattgaatcacactcattgtgtcaattctatctaata |
565 |
Q |
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| T |
45678167 |
tttagttccaatgcttaggttacaacttatagctctttagttccaactcgatgttacttaaccaattgaatcacactcgttgtgtcaattctatctaata |
45678266 |
T |
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| Q |
566 |
ctttctttgacttcatagaaactcttcttttgtatagaaagatattgnnnnnnnaattagacaggctaataaatataaccatcgttccttnnnnnnnnng |
665 |
Q |
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| T |
45678267 |
cttt----gacttcatagaaactcttcttttgtatagaaatatattgtttttttaattaggcaggctaataaatataaccatcgttcctttaaaaaaa-g |
45678361 |
T |
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| Q |
666 |
taaaaccataccatcatcgttaataatagaaacaaaactccatgcaaacgtgacaactgtacattttattttctattttgacaaaactgtccctcttccc |
765 |
Q |
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| T |
45678362 |
taaaaccataccatcatcgttaataatagaaacaaaactccatgcaaacgtgacaactgtacattttattttctattttgacaaaactgtccctcttccc |
45678461 |
T |
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| Q |
766 |
agtgaaactcgtatttttgaaatatatcatcatcacaattatatttggcatttgacaatatatactgtaaatgtttcaaatgatttag---tgttatgct |
862 |
Q |
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| T |
45678462 |
agtgaaactcgtatttttgaaatatatcatcatcaccattatatttggcatttgacaatatatactgtaaatgtttcaaatgatttagtactgttatgct |
45678561 |
T |
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| Q |
863 |
caagcaagtattactcgtttagatttgtagccactgtga-cacttaatcaatcaattgcaacatact-caaggattagaacatacacgt |
949 |
Q |
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| T |
45678562 |
caagcaagtattactcgtttagatttgtagccactgtgaccacttaatcaatcaattgcaacatactccaaggatcagaacatacacgt |
45678650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 45677757 - 45678074
Alignment:
| Q |
8 |
gataacacttaaaattttgaaaactctatagacctttccttttcttgtctaactttttctgccagagatactctttggtaaaagattggccttctcttct |
107 |
Q |
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| T |
45677757 |
gataacacttaaaattttgaaaactctatagacctttccttttcttgtctaactttttctgccagagatactctttggtaaaagattggccttctcttct |
45677856 |
T |
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| Q |
108 |
ttttggcttttagggatgatttttcaaaatcattatcctttggaaaaatttcataattcgggtacaaatacaaaaattacttttgacatctgagtgagat |
207 |
Q |
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| T |
45677857 |
ttttggcttttagggatgatttttcaaaatcattatcctttggaaaaatttcataattcgggtacaaatac-aaaattacttttgacatctgagtgagat |
45677955 |
T |
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| Q |
208 |
aaggtcatatttcttttaatagaaattgcagagaattcaatcaacttcccaaatgattcaccatatttacagtttgaaaattacgtatcttttcaattaa |
307 |
Q |
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| T |
45677956 |
aaggtcatatttcttttaatagaaattgcagagaattcaatcaacttcccaaatgattcaccatatttacagtttgaaaattacgtatcttttcaattaa |
45678055 |
T |
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| Q |
308 |
atgtagatttcttcgattt |
326 |
Q |
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| T |
45678056 |
atgtagatttcttcgattt |
45678074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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