View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4665-Insertion-7 (Length: 708)
Name: NF4665-Insertion-7
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4665-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 7 - 708
Target Start/End: Complemental strand, 36921073 - 36920372
Alignment:
| Q |
7 |
aaattagaggtcttgatttacttgnnnnnnnnncttcgacagaaacaaaagaaaacggtataatattatagttcagtaacatgcaaaaacagagagcaag |
106 |
Q |
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| T |
36921073 |
aaattagaggtcttgatttacttgtgtttttttcttcgacagaaacaaaagaaaacagtataatattatagttcagtaacatgcaaaaacagagagcaag |
36920974 |
T |
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| Q |
107 |
agccataaagaataacagagaaaataggaatgaaataaagtaacctgaatcagtgttaacagtactaacaagctgaagagaaactccttttcccacaaac |
206 |
Q |
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| T |
36920973 |
agccataaagaataacagagaaaataggaatgaaataaagtaacctgaatcagtgttaacagtactaacaagctgaagagaaactccttttcccacaaac |
36920874 |
T |
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| Q |
207 |
tcatgaagaccatcaagcatggaggcagtgaagtcgttgaagtccaacacacttttcttcatcagcacaaccgtcccttcaacttggtggcggttgcttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36920873 |
tcatgaagaccatcaagcatggaggcagtgaagtcgttgaagtccaacacacttttcttcatcagcacaaccgtcccttcaacttggtggcggttgcttt |
36920774 |
T |
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| Q |
307 |
tgtctccggtgaaagcattgagaatgttgtgcaacattttccgagaaaagcagcaaccttgnnnnnnngtggcagagtaacaaagaaacagcgatgttaa |
406 |
Q |
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| T |
36920773 |
tgtctccggtgaaagcattgagaatgttgtgcaacattttccgagaaaaacagtaaccttgaaaaaaagtggcagagtaacacagaaacagcgatgttaa |
36920674 |
T |
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| Q |
407 |
gtgttaaatgcttgtgaagtgagaattgtaaaaagcaacccactctactttgctttttatagttagaaagagtgaaagaatatgatannnnnnnaaaaag |
506 |
Q |
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| T |
36920673 |
gtgttaaatgcttttgaagtgagaattgtaaaaagcaacccactctactttgctttttatagatagaaagagtgaaagaatatgatatttttttaaaaag |
36920574 |
T |
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| Q |
507 |
aatattacaaattaacaaatggagagatatttaaagagnnnnnnnnnaaaatataatgtttgtatacttaaatagtgagttctatttagaaattttagaa |
606 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36920573 |
aatattacaaattaacaaatagagagatatttaaagaattttttttaaaaatataatgtttgtatacctaaatagtgagttctatttagaaattttagaa |
36920474 |
T |
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| Q |
607 |
aattagagattactatttttcttttacacatatttaatcaaatgatagattaaagtgttattattacttgttgnnnnnnnnatgaatgattaaagtgttt |
706 |
Q |
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| T |
36920473 |
aattagagattactatttttcttttacacatatttaatcaaatgatagattaaagtgttattattacttgttgttttttttatgaatgattaaagtgttt |
36920374 |
T |
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| Q |
707 |
ta |
708 |
Q |
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| T |
36920373 |
ta |
36920372 |
T |
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Back To:
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Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 31309801 - 31309678
Alignment:
| Q |
73 |
tatagttcagtaacatgcaaaaacagagagcaagagccataaagaataacagagaaaataggaatgaaataaagtaacctgaatcagtgttaacagtact |
172 |
Q |
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||||||| ||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||||| | |||| |||||||||| |||||||||| ||| |
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| T |
31309801 |
tatagtttagtaacatgcaaaaacagagaacaagaagcataaagaa-aacacagaacataggaatgtagtaaactaacctgaattagtgttaacaacact |
31309703 |
T |
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| Q |
173 |
aacaagctgaagagaaactcctttt |
197 |
Q |
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| T |
31309702 |
atcaagctgaatagaaactcctttt |
31309678 |
T |
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