View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4665-Insertion-8 (Length: 592)

Name: NF4665-Insertion-8
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4665-Insertion-8
NF4665-Insertion-8
[»] chr4 (10 HSPs)
chr4 (8-591)||(6948286-6948870)
chr4 (202-293)||(54851840-54851931)
chr4 (202-279)||(54853850-54853928)
chr4 (255-299)||(6949777-6949821)
chr4 (248-286)||(27435588-27435626)
chr4 (202-279)||(54855592-54855669)
chr4 (52-117)||(11190104-11190169)
chr4 (202-286)||(54852272-54852357)
chr4 (239-286)||(37812397-37812444)
chr4 (204-299)||(54854413-54854510)
[»] chr7 (5 HSPs)
chr7 (11-126)||(662299-662414)
chr7 (202-281)||(11668283-11668363)
chr7 (212-299)||(11668679-11668767)
chr7 (250-308)||(8648794-8648852)
chr7 (250-286)||(15090501-15090537)
[»] chr3 (3 HSPs)
chr3 (202-300)||(27080210-27080309)
chr3 (202-275)||(18194851-18194925)
chr3 (205-299)||(18194586-18194680)
[»] chr5 (7 HSPs)
chr5 (202-285)||(16364592-16364676)
chr5 (204-308)||(7957997-7958102)
chr5 (52-101)||(36687067-36687116)
chr5 (207-285)||(11991120-11991199)
chr5 (250-279)||(29382380-29382409)
chr5 (250-307)||(29385054-29385111)
chr5 (202-285)||(10731557-10731640)
[»] chr2 (6 HSPs)
chr2 (202-285)||(34323317-34323402)
chr2 (448-505)||(26833173-26833230)
chr2 (204-286)||(16642001-16642084)
chr2 (202-293)||(10423576-10423668)
chr2 (399-465)||(37049531-37049597)
chr2 (443-476)||(43689832-43689865)
[»] chr1 (2 HSPs)
chr1 (202-293)||(2017798-2017889)
chr1 (250-293)||(25079283-25079327)
[»] chr8 (2 HSPs)
chr8 (202-275)||(22439297-22439371)
chr8 (47-101)||(24817071-24817125)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 591
Target Start/End: Original strand, 6948286 - 6948870
Alignment:
Q  8 gttggcagcatcatccgtcaaattcttgattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatc 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  6948286 gttggcagcaccatccgtcaaattcttgattgattggaacacaacctcttcgatttcaaatgtctcaccgtcggaactcttcatggtgaacttctttgtc 6948385  T
Q  108 gatgatgatgatgccatgagtgaagtgaatgaggaacagaataggcgtgagtactatttataatgttgtgcccaagcaactagggtctcctacttcatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948386 gatgatgatgatgccatgagtgaagtgaatgaggaacagaataggcgtgagtactatttataatgttgtgcccaagcaactagggtctcctacttcatca 6948485  T
Q  208 aaaatatatccttttgtgtattctgcttaacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcatttaat 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  6948486 aaaatatatccttttgtgtattttgcttaacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcactaaaatacacccatttaat 6948585  T
Q  308 cnnnnnnnnagagcaaacaaacttaatctttttttaaggaaaacaaacttctaaatatctaaagtgttaaaaaca-nnnnnnnnnnnnnnnnaagagaca 406  Q
    |        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||    
T  6948586 cttttttttagaacaaacaaacttaatctttttttaaggaaaacaaacttctaaatatctaaagtgttaaaaacattttttagtttttttttaagagaca 6948685  T
Q  407 aaaatgaaattctgtatactaacaacaacgtgttggcatcttcaacacaagatgtgcctacaaaatgcaaacagagttatacaaagagtccacacaaaac 506  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948686 aaaatgaaattctatatactaacaacaacgtgttcgcatcttcagcacaagatgtgcctacaaaatgcaaacagagttatacaaagagtccacacaaaac 6948785  T
Q  507 gaatgcacagttaacaaatgcacagacaatcaagcggacaagctaacgaactacggacccttaacacataaacaatatttgccgc 591  Q
     |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6948786 aaatgcacagttaacaaatgcaccgacaatcaagcggacaagctaaccaactacggacccttaacacataaacaatatttgccgc 6948870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 54851931 - 54851840
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaa 293  Q
    ||||||||| ||||||||||||||| || ||||| |||||||  | || |||||||||| |||||||||||||||||||| |||||| |||||    
T  54851931 tcatcaaaattatatccttttgtgtcttttgctttaacctccaactat-ttttctctctaaaaaacaaattaaaacaaacacactcggtaaaa 54851840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 54853928 - 54853850
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaa 279  Q
    ||||||||| |||||| |||||||| || ||||| ||||||| || || || |||||||||||||||||||||||||||    
T  54853928 tcatcaaaattatatcattttgtgtcttttgctttaacctccacctattttctctctcttaaaaacaaattaaaacaaa 54853850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 6949777 - 6949821
Alignment:
Q  255 tctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 299  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  6949777 tctcttaaaaataaattaaaacaaactcattcgctaaaatacact 6949821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 27435626 - 27435588
Alignment:
Q  248 tattttctctcttaaaaacaaattaaaacaaactcactc 286  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  27435626 tattttctctcttaaaaacaaactaaaacaaactcactc 27435588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 54855669 - 54855592
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgcttaa-cctcccccaatattttctctcttaaaaacaaattaaaacaaa 279  Q
    ||||||||| ||||||||||||||| || | ||| | |||||||| || ||||||||||||||| ||||||||||||||    
T  54855669 tcatcaaaattatatccttttgtgtttttttcttcagcctccccctat-ttttctctcttaaaatcaaattaaaacaaa 54855592  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 11190104 - 11190169
Alignment:
Q  52 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatg 117  Q
    |||||||||||||||||||||| || || |||||||||| | ||| |||||| || ||||||||||    
T  11190104 cctcttcgatttcaaaggtctcgccttcagaactcttcaggatgatcttcttcattgatgatgatg 11190169  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 54852357 - 54852272
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactc 286  Q
    |||| |||| ||||||||||||||| |  ||||| ||||||| || || |||||||| | |||||||||||||||||||| |||||    
T  54852357 tcattaaaattatatccttttgtgtctcttgctttaacctccacctattttttctctataaaaaacaaattaaaacaaacacactc 54852272  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 37812397 - 37812444
Alignment:
Q  239 ctcccccaatattttctctcttaaaaacaaattaaaacaaactcactc 286  Q
    ||||||| || ||||||||||| |||||||||||||||||||| ||||    
T  37812397 ctccccctattttttctctctttaaaacaaattaaaacaaacttactc 37812444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 54854510 - 54854413
Alignment:
Q  204 atcaaaaatatatccttttgtgtattctgctt-aacctcccc-caatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 299  Q
    ||||||| ||||||||||||| | || ||||| || ||||||  | | ||||||||||||| | ||||||||||||||||||| || ||||| |||||    
T  54854510 atcaaaattatatccttttgtatcttttgcttcaatctccccatatttttttctctcttaagatcaaattaaaacaaactcacacgataaaacacact 54854413  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 662299 - 662414
Alignment:
Q  11 ggcagcatcatccgtcaaattcttgattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgat 110  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||| ||||| ||||||  | |||    
T  662299 ggcaacatcatcggtcaaattcttgattgattggaacaccacctcttcgatttcaaaggtcacgctgtcggaactcttcaaggtgatcttcttcgtggat 662398  T
Q  111 gatgatgatgccatga 126  Q
    ||||||||||||||||    
T  662399 gatgatgatgccatga 662414  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 11668283 - 11668363
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaact 281  Q
    ||||||||| |||||||||||||||  | ||||| |||||||||| || ||||||||||||||||||||||||||||||||    
T  11668283 tcatcaaaattatatccttttgtgtcatttgcttcaacctccccctattttttctctcttaaaaacaaattaaaacaaact 11668363  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 11668679 - 11668767
Alignment:
Q  212 tatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 299  Q
    |||||| |||| ||| || ||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11668679 tatatcattttatgtcttttgcttcaacgtccccctattttttctctcttaaaaacaaattaaaacaaactcactcgataaaatacact 11668767  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 8648794 - 8648852
Alignment:
Q  250 ttttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcatttaatc 308  Q
    |||| ||||||| ||||||||||||| ||||||||||| ||||| ||||| | ||||||    
T  8648794 ttttttctcttacaaacaaattaaaataaactcactcgataaaacacactaacttaatc 8648852  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 15090537 - 15090501
Alignment:
Q  250 ttttctctcttaaaaacaaattaaaacaaactcactc 286  Q
    |||||||| || |||||||||||||||||||||||||    
T  15090537 ttttctctattgaaaacaaattaaaacaaactcactc 15090501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 27080210 - 27080309
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactc 300  Q
    ||||||||| ||| ||||||||||| || ||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  27080210 tcatcaaaattatttccttttgtgtcttttgcttcaacctccccctattttttccctcttaaaaacaaattaaaacaaactcactcaataaaatacactc 27080309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 18194925 - 18194851
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaa 275  Q
    ||||||||| |||||| |||||||| || | ||| ||| |||||| || ||||||||||||||||||||||||||    
T  18194925 tcatcaaaattatatcattttgtgtcttttacttcaacttccccctattttttctctcttaaaaacaaattaaaa 18194851  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 18194680 - 18194586
Alignment:
Q  205 tcaaaaatatatccttttgtgtattctgcttaacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacact 299  Q
    |||||| ||||||||||||| | || |  | || ||||| |||| |||||| |||||||||||||||||||| ||||| || | ||||| |||||    
T  18194680 tcaaaagtatatccttttgtattttttcttcaatctccctcaattttttctatcttaaaaacaaattaaaacgaactcgcttgataaaacacact 18194586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 16364592 - 16364676
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcact 285  Q
    ||||||||| |||||| |||||||| || ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  16364592 tcatcaaaattatatctttttgtgtcttttgcttcaacctccccctatattttctctcttaaaaataaattaaaacaaactcact 16364676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 204 - 308
Target Start/End: Original strand, 7957997 - 7958102
Alignment:
Q  204 atcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcat 302  Q
    ||||||| |||||| |||||||| || ||||  ||| |||| | || ||| || ||||||||||||||||||||||||||||||| || ||| |||| |     
T  7957997 atcaaaattatatctttttgtgtcttttgctccaacttccctctatttttgctttcttaaaaacaaattaaaacaaactcactcgatagaattcactaac 7958096  T
Q  303 ttaatc 308  Q
    ||||||    
T  7958097 ttaatc 7958102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 36687067 - 36687116
Alignment:
Q  52 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 101  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  36687067 cctcgtcgatttcaaaggtctccccgtcggaactcttcagggtgatcttc 36687116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 11991120 - 11991199
Alignment:
Q  207 aaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcact 285  Q
    |||||||||||||||||||| || ||||| || ||| ||| || || ||| ||||||||| |||| ||||||||||||||    
T  11991120 aaaaatatatccttttgtgtcttttgcttcaatctcaccctattttctctttcttaaaaataaatcaaaacaaactcact 11991199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 279
Target Start/End: Original strand, 29382380 - 29382409
Alignment:
Q  250 ttttctctcttaaaaacaaattaaaacaaa 279  Q
    ||||||||||||||||||||||||||||||    
T  29382380 ttttctctcttaaaaacaaattaaaacaaa 29382409  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 29385054 - 29385111
Alignment:
Q  250 ttttctctcttaaaaacaaattaaaacaaactcactcgctaaaatacactcatttaat 307  Q
    |||||||||||| ||||||||||||||||| |||  || ||||| ||||| |||||||    
T  29385054 ttttctctcttagaaacaaattaaaacaaattcaaccgataaaacacactaatttaat 29385111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 10731640 - 10731557
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcact 285  Q
    ||||||||| |||||| |||||||| || ||||| ||| || | | || |||||||||||| |||||||| ||||||||||||||    
T  10731640 tcatcaaaattatatc-ttttgtgtcttttgcttcaacatctctctattttttctctcttagaaacaaatgaaaacaaactcact 10731557  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 34323402 - 34323317
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctctta-aaaacaaattaaaacaaactcact 285  Q
    ||||||||| ||||  ||||||||| || ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  34323402 tcatcaaaattatacacttttgtgtcttttgcttcaacctccccctatattttctctcttaaaaaacaaattaaaacaaactcact 34323317  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 505
Target Start/End: Original strand, 26833173 - 26833230
Alignment:
Q  448 tcaacacaagatgtgcctacaaaatgcaaacagagttatacaaagagtccacacaaaa 505  Q
    ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||    
T  26833173 tcaacacaagatgtgccaacaaaatgcaaccaaagttatacaaaaagtccacacaaaa 26833230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 16642084 - 16642001
Alignment:
Q  204 atcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactc 286  Q
    ||||||| |||||||||||| || || || || |||||| | | || |||||||||||||||||||||||||||||||||||||    
T  16642084 atcaaaattatatccttttgcgtcttttgtttcaacctctctctattttttctctcttaaaaacaaattaaaacaaactcactc 16642001  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 10423668 - 10423576
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaa 293  Q
    ||||||||| |||||| |||||||| || ||||  ||| |||| | || ||| || ||||||||||||||||||||||||||||||| |||||    
T  10423668 tcatcaaaattatatctttttgtgtcttttgctccaacttccctctatttttgctttcttaaaaacaaattaaaacaaactcactcgataaaa 10423576  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 37049597 - 37049531
Alignment:
Q  399 aagagacaaaaatgaaattctgtatactaacaacaacgtgttggcatcttcaacacaagatgtgcct 465  Q
    ||||| ||||||||||||| | |||||||||||||||| | | |||| |||| |||||| |||||||    
T  37049597 aagaggcaaaaatgaaattatatatactaacaacaacgggatcgcattttcagcacaaggtgtgcct 37049531  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Complemental strand, 43689865 - 43689832
Alignment:
Q  443 catcttcaacacaagatgtgcctacaaaatgcaa 476  Q
    |||||||||||||||||||||||||| |||||||    
T  43689865 catcttcaacacaagatgtgcctacagaatgcaa 43689832  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 2017889 - 2017798
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaacaaactcactcgctaaaa 293  Q
    ||||||||| |||||  ||||||||||| || || ||||||| || || |||||||||||||||||||||||||||||||||||||| |||||    
T  2017889 tcatcaaaagtatatatttttgtgtattttgtttcaacctcctcctat-ttttctctcttaaaaacaaattaaaacaaactcactcgataaaa 2017798  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 25079327 - 25079283
Alignment:
Q  250 ttttctctcttaaaaa-caaattaaaacaaactcactcgctaaaa 293  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||    
T  25079327 ttttctctcttaaaaaacaaattaaaacaaactctctcgataaaa 25079283  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 22439297 - 22439371
Alignment:
Q  202 tcatcaaaaatatatccttttgtgtattctgctt-aacctcccccaatattttctctcttaaaaacaaattaaaa 275  Q
    ||||||||| |||||| |||||||| || | ||| ||| |||||| || ||||||||||||||||||||||||||    
T  22439297 tcatcaaaattatatcattttgtgtcttttacttcaacttccccctattttttctctcttaaaaacaaattaaaa 22439371  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 24817125 - 24817071
Alignment:
Q  47 cacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 101  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||    
T  24817125 cacaacctcgtcgatttcaaaggtctcgccgtcggaacttttcaaggtgatcttc 24817071  T

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