View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4665-Insertion-9 (Length: 354)
Name: NF4665-Insertion-9
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4665-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 37515203 - 37514859
Alignment:
| Q |
8 |
aggtggtatgtgtttggtgatgatgacacaattttctttcctgagaatcttgttaagacactttctaaatatgatcataggctttggtactatgttggag |
107 |
Q |
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| T |
37515203 |
aggtggtatgtgtttggtgatgatgacacaattttctttcctgagaatcttgttaagacactttctaaatatgatcatagactttggtactatgttggag |
37515104 |
T |
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| Q |
108 |
cttattcggaaaattatgaagggtctcaagcttttggttttggaatggcttttggtggaggtggttttgctttaagtgcttctttagcaaatgttttagc |
207 |
Q |
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| T |
37515103 |
cttattcggaaaattatgaagggtctcaaacttttggttttggaatggcttttggtggaggtggttttgctttaagtgcttctttagcaaatgttttagc |
37515004 |
T |
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| Q |
208 |
taaggtttttgattcatgcattgaaagatattctcatctttatggaagtgatgctagggtgttctcttgcatagcagaacttggtgttggattaacatat |
307 |
Q |
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| T |
37515003 |
taaggtttttgattcatgtattgaaagatattctcatctttatggaagtgatgctagggtgttctcttgcatagcagaacttggtgttggattaacatat |
37514904 |
T |
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| Q |
308 |
gaacccggttttcaccaggtaataaataattactttgatttaacg |
352 |
Q |
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| T |
37514903 |
gaacccggttttcaccaggtaataaataattactttgatttaacg |
37514859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 16458502 - 16458183
Alignment:
| Q |
10 |
gtggtatgtgtttggtgatgatgacacaattttctttcctgagaatcttgttaagacactttctaaatatgatcataggctttggtactatgttggagct |
109 |
Q |
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| T |
16458502 |
gtggtatgtgtttggagacgacgacacggttttcttcccggagaatttggtgaagactctttctaaatatgatcatgagctttggtattatattggtgca |
16458403 |
T |
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| Q |
110 |
tattcggaaaattatgaagggtctcaagcttttggttttggaatggcttttggtggaggtggttttgctttaagtgcttctttagcaaatgttttagcta |
209 |
Q |
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| T |
16458402 |
cactctgagatttatgagcagaatcgtttgtttggttttggaatggcttttggtggtgctggttttgctattagttcatctcttgctaaagttttggcaa |
16458303 |
T |
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| Q |
210 |
aggtttttgattcatgcattgaaagatattctcatctttatggaagtgatgctagggtgttctcttgcatagcagaacttggtgttggattaacatatga |
309 |
Q |
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| T |
16458302 |
aggtttttgattcttgtttggaaaggtaccctcatctatatggaagtgatggtagagtttactcttgtttagcagaacttggtgtaggattgacacatga |
16458203 |
T |
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| Q |
310 |
acccggttttcaccaggtaa |
329 |
Q |
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| T |
16458202 |
accaggttttcatcaggtaa |
16458183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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