View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4665_high_2 (Length: 372)

Name: NF4665_high_2
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4665_high_2
NF4665_high_2
[»] chr1 (3 HSPs)
chr1 (8-343)||(361700-362034)
chr1 (8-347)||(368614-368953)
chr1 (78-204)||(51874697-51874823)
[»] chr6 (7 HSPs)
chr6 (35-161)||(32960680-32960806)
chr6 (78-129)||(29012869-29012920)
chr6 (57-161)||(29124153-29124257)
chr6 (35-121)||(32740661-32740747)
chr6 (78-204)||(32744850-32744976)
chr6 (150-203)||(23218657-23218710)
chr6 (89-125)||(21374378-21374414)
[»] scaffold0134 (1 HSPs)
scaffold0134 (78-203)||(16215-16340)
[»] chr2 (4 HSPs)
chr2 (48-165)||(7488712-7488829)
chr2 (48-165)||(7498852-7498969)
chr2 (77-163)||(7503341-7503427)
chr2 (86-160)||(44937793-44937867)
[»] chr4 (4 HSPs)
chr4 (35-160)||(54295027-54295152)
chr4 (57-204)||(9581951-9582098)
chr4 (57-204)||(9587646-9587793)
chr4 (83-160)||(20426618-20426695)
[»] chr5 (7 HSPs)
chr5 (87-169)||(32642946-32643028)
chr5 (87-174)||(27173414-27173501)
chr5 (97-160)||(42637357-42637420)
chr5 (99-153)||(40549282-40549336)
chr5 (86-160)||(42564967-42565041)
chr5 (91-127)||(31789553-31789589)
chr5 (57-157)||(42629597-42629697)
[»] scaffold0129 (1 HSPs)
scaffold0129 (87-165)||(17152-17230)
[»] chr3 (1 HSPs)
chr3 (91-155)||(5162455-5162519)
[»] scaffold0613 (1 HSPs)
scaffold0613 (78-203)||(160-285)
[»] scaffold0054 (1 HSPs)
scaffold0054 (52-160)||(39782-39890)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 362034 - 361700
Alignment:
Q  8 agctagctccttatgttcattcgcaatgaatatctcgccgttcttccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagtttt 107  Q
    ||||||||  |||| ||| |||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||    
T  362034 agctagctatttatcttctttcgcaatga-tatcttgccgttcttccctactccaataagatgcccaaaacaagataatggtccaacaatgaagagcttt 361936  T
Q  108 atccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcatttgttcatcattagatatcaaagcaattgactcatttaacaaaa 207  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  361935 atccatgattccttcacaccgatttcaccaagaattgatatgtgaaaagtagtcatttgtgcatcattagatatcaaagcaattgactcatttaacaaaa 361836  T
Q  208 ttaaatgtctatccaccaattcaaaattgatatcattgtccacatttgatggtatggatgttagaacgaactcttcgctacccaaatcaaatgacaccaa 307  Q
    |||||||| || ||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  361835 ttaaatgtgtacccaccaattcaaaattgatatcattgtgcacatctgagggtatggatgttagaacgaactcttcactacccaaatcaaatgataccaa 361736  T
Q  308 atatacattatcaatatatgtttcactttcacccaa 343  Q
    |||||||||||| |||||||||||||||||||||||    
T  361735 atatacattatcgatatatgtttcactttcacccaa 361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 368953 - 368614
Alignment:
Q  8 agctagctccttatgttcattcgcaatgaatatctcgccgttcttccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagtttt 107  Q
    ||||||||| |||| ||| || | ||||||||||||||| ||| |||||||||||||||||| ||| | | |||  |||||||||||||||||||||||     
T  368953 agctagctcattatcttcttttgaaatgaatatctcgccattcatccctactccaataggatacccgacaaaaggtaatggtccaacaatgaagagtttg 368854  T
Q  108 atccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcatttgttcatcattagatatcaaagcaattgactcatttaacaaaa 207  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||||||  || || | ||| ||||||| |||||||| ||||| |||||||       
T  368853 atccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagttgttcgtgcttcactagatattaaagcaatagactcgtttaacactg 368754  T
Q  208 ttaaatgtctatccaccaattcaaaattgatatcattgtccacatttgatggtatggatgttagaacgaactcttcgctacccaaatcaaatgacaccaa 307  Q
    |||||||  ||| |||| || |||||||||||| ||| | |  | |||||||||||| |||||| | |||||||||  ||||||||||||||||||||||    
T  368753 ttaaatgagtattcacccatacaaaattgatattatttttcctagttgatggtatgggtgttaggaagaactcttcattacccaaatcaaatgacaccaa 368654  T
Q  308 atatacattatcaatatatgtttcactttcacccaaccaa 347  Q
    ||||| |||||  |||| ||||||| ||| ||||||||||    
T  368653 atatatattatgcatatctgtttcagttttacccaaccaa 368614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 51874697 - 51874823
Alignment:
Q  78 caagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcatttgttcatcattag 177  Q
    ||||| ||||| ||||||| ||| ||||| |||||||||||||||||||  | |||| | | |||||| || | |||||||||||||||| | | ||  |    
T  51874697 caagataatggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatg 51874796  T
Q  178 atatcaaagcaattgactcatttaaca 204  Q
    | ||||| ||||| || ||||||||||    
T  51874797 agatcaaggcaatggattcatttaaca 51874823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 32960680 - 32960806
Alignment:
Q  35 gaatatctcgccgttcttccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttca 134  Q
    |||||| || || |||||||| ||||| |||||| || ||| ||||| |||||||| |||||| |||||||| ||||| |||||||||| ||||||||||    
T  32960680 gaatatttcccccttcttccccactcccataggacgctcaacacaaggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttca 32960779  T
Q  135 tcaagaattgacatgtgaaaagtagtc 161  Q
    || | |||||| |  ||||||||||||    
T  32960780 tccaaaattgatacatgaaaagtagtc 32960806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 29012920 - 29012869
Alignment:
Q  78 caagacaatggtccaacaatgaagagttttatccatgattccttcacaccga 129  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  29012920 caagacaacggtccaacaatgaagagtttggtccatgattccttcacaccga 29012869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 29124257 - 29124153
Alignment:
Q  57 actccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaag 156  Q
    |||||||||||| |  ||| ||||| ||||||||| | | ||||||| ||  ||||||||||||||| |||||| ||| | |||||||| || |||||||    
T  29124257 actccaataggacgatcaacacaaggcaatggtcccatagtgaagagcttggtccatgattccttcataccgatctcacccagaattgatatctgaaaag 29124158  T
Q  157 tagtc 161  Q
    |||||    
T  29124157 tagtc 29124153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 32740661 - 32740747
Alignment:
Q  35 gaatatctcgccgttcttccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattcctt 121  Q
    |||||| || || ||| |||| |||||||||||| |   || || |||||||||||||||||||||||||||  |||| ||||||||    
T  32740661 gaatatttctcctttcgtccccactccaataggacgttgaacaccagacaatggtccaacaatgaagagtttggtccacgattcctt 32740747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 32744850 - 32744976
Alignment:
Q  78 caagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcatttgttcatcattag 177  Q
    |||| ||||||||||| | ||||||| ||  |||||||||| |||| ||| || ||| | | |||||| ||||||||||||||| | | ||||| ||  |    
T  32744850 caaggcaatggtccaatagtgaagagattggtccatgattctttcataccaatctcacccataattgatatgtgaaaagtagtcgtcttttcataatatg 32744949  T
Q  178 atatcaaagcaattgactcatttaaca 204  Q
    | ||||| ||||| ||| |||||||||    
T  32744950 agatcaatgcaatggacccatttaaca 32744976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 23218657 - 23218710
Alignment:
Q  150 tgaaaagtagtcatttgttcatcattagatatcaaagcaattgactcatttaac 203  Q
    |||||||||||||||||||||| || ||| ||||  |||||| |||||||||||    
T  23218657 tgaaaagtagtcatttgttcatgataagagatcattgcaattcactcatttaac 23218710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 21374378 - 21374414
Alignment:
Q  89 tccaacaatgaagagttttatccatgattccttcaca 125  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  21374378 tccaacaatgaagagtttgatccatgattctttcaca 21374414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 16215 - 16340
Alignment:
Q  78 caagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcatttgttcatcattag 177  Q
    |||||||||||||||| | ||||||| || |||||||||||||||  ||| |||||| | | |||||| ||||||||||||||| || |||||| || ||    
T  16215 caagacaatggtccaatagtgaagagattgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaagtagtccttggttcatgataag 16314  T
Q  178 atatcaaagcaattgactcatttaac 203  Q
    | ||||| |||||  |||||||||||    
T  16315 agatcaatgcaatgcactcatttaac 16340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 7488712 - 7488829
Alignment:
Q  48 ttcttccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgaca 147  Q
    ||||||||| |||  |||||| |  ||| ||||||||||||||||||| |||| |||||| |||||||||| |||||||| |||||| | | |||||| |    
T  7488712 ttcttccctcctctgataggacgtgcaacacaagacaatggtccaacattgaaaagttttttccatgattctttcacaccaatttcacccaaaattgata 7488811  T
Q  148 tgtgaaaagtagtcattt 165  Q
    ||||||||||||| ||||    
T  7488812 tgtgaaaagtagttattt 7488829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 7498852 - 7498969
Alignment:
Q  48 ttcttccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgaca 147  Q
    ||||||||| |||| || ||| |  ||| |||||||||||| |||||| ||||||||||  |||||||||| |||||  | |||||||| | |||||| |    
T  7498852 ttcttccctcctccgatgggacgtgcaacacaagacaatggcccaacattgaagagtttagtccatgattctttcacgtcaatttcatccaaaattgata 7498951  T
Q  148 tgtgaaaagtagtcattt 165  Q
    ||||||||||||||||||    
T  7498952 tgtgaaaagtagtcattt 7498969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 7503341 - 7503427
Alignment:
Q  77 acaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcat 163  Q
    ||||||||||||  ||||||||||||||||  |  |||||||||||  ||| |||||||| | ||||||||||||||||||||||||    
T  7503341 acaagacaatgggacaacaatgaagagtttagtttatgattccttcgaaccaatttcatctaaaattgacatgtgaaaagtagtcat 7503427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 44937793 - 44937867
Alignment:
Q  86 tggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagt 160  Q
    |||||||||||  ||||||||  |||||||||| ||||| |||| |||| | | |||||| ||||||||||||||    
T  44937793 tggtccaacaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaaagtagt 44937867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 54295027 - 54295152
Alignment:
Q  35 gaatatctcgccgttcttccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttca 134  Q
    |||||| || || ||| |||| ||||| ||||||||| ||| | ||||||| |||||||||||||| |||||  |||| |||||  ||||||||| ||||    
T  54295027 gaatatttcccccttcgtccccactccgataggatgctcaacataagacaacggtccaacaatgaaaagtttggtccacgattctatcacaccgaattca 54295126  T
Q  135 tcaagaattgacatgtgaaaagtagt 160  Q
     | | |||||| ||||||||| ||||    
T  54295127 cccaaaattgatatgtgaaaattagt 54295152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 9581951 - 9582098
Alignment:
Q  57 actccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaag 156  Q
    |||||||||||| || |||  |||||||| |||||||| |||||||||||  ||||||| ||||| | ||||  |||| | | |||||| |||||||||     
T  9581951 actccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaat 9582050  T
Q  157 tagtcatttgttcatcattagatatcaaagcaattgactcatttaaca 204  Q
    | ||| | | ||||| ||  || ||||| ||||| ||| |||||||||    
T  9582051 ttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaaca 9582098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 9587646 - 9587793
Alignment:
Q  57 actccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaag 156  Q
    |||||||||||| || |||  |||||||| |||||||| |||||||||||  ||||||| ||||| | ||||  |||| | | |||||| |||||||||     
T  9587646 actccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaat 9587745  T
Q  157 tagtcatttgttcatcattagatatcaaagcaattgactcatttaaca 204  Q
    | ||| | | ||||| ||  || ||||| ||||| ||| |||||||||    
T  9587746 ttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaaca 9587793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 20426695 - 20426618
Alignment:
Q  83 caatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagt 160  Q
    ||||||||||||||  ||||||||  |||| ||||||||||| |||| ||||   | |||||| ||||||||||||||    
T  20426695 caatggtccaacaacaaagagtttggtccacgattccttcacgccgagttcacttaaaattgatatgtgaaaagtagt 20426618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 32643028 - 32642946
Alignment:
Q  87 ggtccaacaatgaagagttttatccatgattccttcacaccgatttca-tcaagaattgacatgtgaaaagtagtcatttgttc 169  Q
    |||||||||||||||||||| ||||||||||||||||||   | |||| |||| |||||| |||| |||||||| |||||||||    
T  32643028 ggtccaacaatgaagagtttgatccatgattccttcacagttaattcactcaa-aattgatatgttaaaagtagccatttgttc 32642946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 27173414 - 27173501
Alignment:
Q  87 ggtccaacaatgaagagttttatccatgattccttcacaccgatttca-tcaagaattgacatgtgaaaagtagtcatttgttcatcat 174  Q
    |||||||||||||||||||| ||||||||||| || ||||  | |||| |||| |||||| |||| | |||||||||||||||| ||||    
T  27173414 ggtccaacaatgaagagtttaatccatgattcttttacacttagttcactcaa-aattgatatgttacaagtagtcatttgttcttcat 27173501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 42637357 - 42637420
Alignment:
Q  97 tgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagt 160  Q
    ||||||||||  |||||||||||||||| |||| |||| | | |||||| ||||||||||||||    
T  42637357 tgaagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagt 42637420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 40549336 - 40549282
Alignment:
Q  99 aagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaa 153  Q
    |||||||| |||||||||||||||||||||| |||| | | |||||| |||||||    
T  40549336 aagagtttgatccatgattccttcacaccgacttcacccaaaattgatatgtgaa 40549282  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 42564967 - 42565041
Alignment:
Q  86 tggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagt 160  Q
    ||||||||||||||| ||||| |||||||||||||| ||||| | |||| | | || ||| |||| |||||||||    
T  42564967 tggtccaacaatgaaaagtttgatccatgattccttgacacctagttcacccaaaactgatatgttaaaagtagt 42565041  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 31789589 - 31789553
Alignment:
Q  91 caacaatgaagagttttatccatgattccttcacacc 127  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  31789589 caacagtgaagagtttgatccatgattccttcacacc 31789553  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 42629597 - 42629697
Alignment:
Q  57 actccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaag 156  Q
    ||||||||||||||| ||| ||| | ||| || || ||||| || ||||| |||||||| |||||||| |||| |||| | | |||||| || |||||||    
T  42629597 actccaataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaaag 42629696  T
Q  157 t 157  Q
    |    
T  42629697 t 42629697  T

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Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 17152 - 17230
Alignment:
Q  87 ggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcattt 165  Q
    ||||||| || |||||||||  |||| || ||||||||||||| |||| | ||||| || |||||||||||||||||||    
T  17152 ggtccaataacgaagagtttagtccaagactccttcacaccgagttcacccagaatagaaatgtgaaaagtagtcattt 17230  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 5162519 - 5162455
Alignment:
Q  91 caacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaa 155  Q
    ||||| |||||||||| |||||||||||||||||||| | |||| | | |||||| |||||||||    
T  5162519 caacagtgaagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaa 5162455  T

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Target: scaffold0613 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 285 - 160
Alignment:
Q  78 caagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtgaaaagtagtcatttgttcatcattag 177  Q
    |||||||||||||||| | ||||| | ||  |||||||||| |||   || |||||| | | |||||| ||||||||||||||| || || ||| || ||    
T  285 caagacaatggtccaatagtgaagtgattggtccatgattcattctttccaatttcacccaaaattgatatgtgaaaagtagtccttggtacatgataag 186  T
Q  178 atatcaaagcaattgactcatttaac 203  Q
    | ||||| |||||  |||||||||||    
T  185 agatcaatgcaatgcactcatttaac 160  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 39782 - 39890
Alignment:
Q  52 tccctactccaataggatgcccaagacaagacaatggtccaacaatgaagagttttatccatgattccttcacaccgatttcatcaagaattgacatgtg 151  Q
    |||| ||||| |||||| || |||  |||||||| ||||||||| | |||||||| ||||| |||||||| |  |||| |||| | | |||||  |||||    
T  39782 tccccactccgataggacgctcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtg 39881  T
Q  152 aaaagtagt 160  Q
    |||||||||    
T  39882 aaaagtagt 39890  T

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