View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4665_low_1 (Length: 535)

Name: NF4665_low_1
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4665_low_1
NF4665_low_1
[»] chr4 (12 HSPs)
chr4 (19-528)||(6947792-6948290)
chr4 (52-392)||(11160646-11160986)
chr4 (423-528)||(6950263-6950367)
chr4 (61-175)||(11931944-11932058)
chr4 (54-239)||(11174669-11174854)
chr4 (52-119)||(11166276-11166343)
chr4 (54-118)||(11179291-11179355)
chr4 (54-100)||(11182131-11182177)
chr4 (54-118)||(11189953-11190017)
chr4 (370-401)||(6950380-6950411)
chr4 (282-356)||(11179071-11179145)
chr4 (55-113)||(52791991-52792049)
[»] chr7 (2 HSPs)
chr7 (22-420)||(661917-662297)
chr7 (63-173)||(6778514-6778624)
[»] chr8 (3 HSPs)
chr8 (61-121)||(24817214-24817274)
chr8 (55-104)||(24406504-24406553)
chr8 (55-104)||(24412655-24412704)
[»] chr5 (3 HSPs)
chr5 (61-106)||(8981943-8981988)
chr5 (55-106)||(8991442-8991493)
chr5 (61-239)||(35390404-35390589)


Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 6948290 - 6947792
Alignment:
Q  19 ccaacgacactgaaatcctggttccgcacatacccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6948290 ccaacgacactgaaatcctggttccgcacatacccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttctgatga 6948191  T
Q  119 aaagctctttgatgatgaacttaacaaatgggacactgaattcgtaaaggttgataatgttacgatcttcaatctcatctgggctgcaagctatctgaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6948190 aaagctctttgatgatgaacttaacaaatgggacactgaattcgtaaaggttgataatgttacgatcttcaatctcatctgggctgctagctatctgaat 6948091  T
Q  219 atcaagagtctcttggatctttcaatgaaagctctagcagacatgatcaaggataagaagtcggaggagattagtaagattttcaacattgtgaatgctt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6948090 atcaagagtctcttggatctttcaatgaaagctctagcagacatgatcaaggataagaagccggaggagattagtaagattttcaacattgtgaatgctt 6947991  T
Q  319 accgtcccgaggaagatgaggaagttcgtcgtgaaaatcaatgcacttttgaaaactgattagagtctagggtttagtctctaaaactttatatggttaa 418  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6947990 accgtcccaaggaagatgaggaagttcgttgtgaaaatcaatgcacttttgaaaactgattagagtctagggtttagtctctaaaactttatatggtt-- 6947893  T
Q  419 gatagttaagaggccactgcttttgttgattattatattttaacatgggattttttgttacacttcgttttcatcatgaaaagaactgcattgtagattt 518  Q
           ||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||||||||||    
T  6947892 -------aagaggccactgc-tttgttgattattatattttaacatgggatattatgttacgcttcgttttcatcatg-aaagaactgcattgtagattt 6947802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 52 - 392
Target Start/End: Original strand, 11160646 - 11160986
Alignment:
Q  52 ccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaacaaatggga 151  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||| ||| ||||||| |||||||||| || ||| |||||| |||||||||||||    
T  11160646 ccggcaagatcttggctatggttattgagcattgcaagaagcatgttgacgctaccagttctgatgaaaagccctctgaagatgaaattaacaaatggga 11160745  T
Q  152 cactgaattcgtaaaggttgataatgttacgatcttcaatctcatctgggctgcaagctatctgaatatcaagagtctcttggatctttcaatgaaag-c 250  Q
    |||||||||||| ||||||||  | | |||  ||||| ||||||||| |||||||| |||||| || ||||| |||||  |||||||| | ||| ||| |    
T  11160746 cactgaattcgtcaaggttgaccaagataccctcttcgatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttac-atgcaagac 11160844  T
Q  251 tctagcagacatgatcaaggataagaagtcggaggagattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatgaggaagttcgtcgt 350  Q
    | |||||||||||||||||| || || | ||||||||||| |||||| |||||||||| | |||| ||||  ||| |||||||| |||||||| ||| |     
T  11160845 tgtagcagacatgatcaagggtaggacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtagc 11160944  T
Q  351 gaaaatcaatgcacttttgaaaactgattagagtctagggtt 392  Q
    |||| ||||||  |||||||  | ||||||||||||||||||    
T  11160945 gaaactcaatgggcttttgacgaatgattagagtctagggtt 11160986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 423 - 528
Target Start/End: Complemental strand, 6950367 - 6950263
Alignment:
Q  423 gttaagaggccactgcttttgttgattattatattttaacatgggattttttgttacacttcgttttcatcatgaaaagaactgcattg-tagatttacc 521  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||| |||||||| |    
T  6950367 gttaagagaccactgcttt-gttgtttattatattttaacatgggatattatgttacgcttcgttttcatcatg-aaagaactgcattgttagatttatc 6950270  T
Q  522 tatgctt 528  Q
    |||||||    
T  6950269 tatgctt 6950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 11932058 - 11931944
Alignment:
Q  61 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaacaaatgggacactgaatt 160  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||  || |||||| | || ||||||||  |||||||    
T  11932058 tcttggcgaaggttattgagtattgcaagaagcatgttgaggctgagagttccgatggaaagccctccgaggatgaattgaagaaatgggatgctgaatt 11931959  T
Q  161 cgtaaaggttgataa 175  Q
    ||| |||||||||||    
T  11931958 cgtcaaggttgataa 11931944  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 11174669 - 11174854
Alignment:
Q  54 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaacaaatgggaca 153  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||   ||| || ||| ||||||| |     || ||||||||||| || |||||      
T  11174669 ggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaatatgcaagatccaatgaaaaaccaccggaggatgaacttaagaagtgggatg 11174768  T
Q  154 ctgaattcgtaaaggttgataatgttacgatcttcaatctcatctgggctgcaagctatctgaatatcaagagtctcttggatctt 239  Q
    ||||||||||  |||||||| | |  ||  ||||| ||||||||| |||||| | |||| |||| ||||||||||| |||||||||    
T  11174769 ctgaattcgtccaggttgatcaagaaaccctcttcgatctcatcttggctgctaactatttgaacatcaagagtcttttggatctt 11174854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 11166343 - 11166276
Alignment:
Q  52 ccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaa 119  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  11166343 ccggcaagatcttggctatggttattgagtattgcaagaaacatgttgatgctgcaagttctgatgaa 11166276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 11179355 - 11179291
Alignment:
Q  54 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatga 118  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| |||||    
T  11179355 ggcaagatcttggctatggttattgagtattgcaagaaacatgttgatgctgcaagttctgatga 11179291  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 11182131 - 11182177
Alignment:
Q  54 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttga 100  Q
    |||||| |||||||||||||||| |||||||||||||| ||||||||    
T  11182131 ggcaagatcttggctaaggttatcgagtattgcaagaaacatgttga 11182177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 11190017 - 11189953
Alignment:
Q  54 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatga 118  Q
    |||||| ||||||| | ||||||||||||||||||||| |||||||| ||||  ||||| |||||    
T  11190017 ggcaagatcttggccatggttattgagtattgcaagaaacatgttgatgctgtaagttctgatga 11189953  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 401
Target Start/End: Complemental strand, 6950411 - 6950380
Alignment:
Q  370 aaaactgattagagtctagggtttagtctcta 401  Q
    ||||||||||||||||||||||||||||||||    
T  6950411 aaaactgattagagtctagggtttagtctcta 6950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 11179145 - 11179071
Alignment:
Q  282 gaggagattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatgaggaagttcgtcgtgaaaat 356  Q
    ||||||||| | |||||||||||||||  ||||| ||||   || |||||||| |||||||||||||| ||||||    
T  11179145 gaggagattcgcaagattttcaacattaagaatgattacaccccagaggaagaggaggaagttcgtcgcgaaaat 11179071  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 52792049 - 52791991
Alignment:
Q  55 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttcc 113  Q
    ||||| ||||| | ||||||||||||||||| |||||||| ||||| ||| ||||||||    
T  52792049 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttcc 52791991  T

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Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 420
Target Start/End: Complemental strand, 662297 - 661917
Alignment:
Q  22 acgacactgaaatcctggttccgcacatacccggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaa 121  Q
    |||||| ||||||||||||||||| |||| | |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  662297 acgacattgaaatcctggttccgcgcataacgggcaagatattggctaaggttattgagtattgcaagaaacatgttgaggctgccagttcttatgaaaa 662198  T
Q  122 gctctttgatgatgaacttaacaaatgggacactgaattcgtaaaggttgataatgttacgatcttcaatctcatctgggctgcaagctatctgaatatc 221  Q
    ||||||||||||| |||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||||| |||||||||||                 
T  662197 gctctttgatgataaacttaacaaatggtacactgaattcgtcgaggttgataatgttacgctcttcaatctcatatgggctgcaag------------- 662111  T
Q  222 aagagtctcttggatctttcaatgaaagctctagcagacatgatcaaggataagaagtcggaggagattagtaagattttcaacattgtgaatgcttacc 321  Q
         | |||||||||||||||| ||  ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| | ||||||||||    
T  662110 -----tatcttggatctttcaatcaagactctagcagacatgatcaaggataagaagccggaggatattggtaagattttcaacattataaatgcttacc 662016  T
Q  322 gtcccgaggaagatgaggaagttcgtcgtgaaaatcaatgcacttttgaaaactgattagagtctagggtttagtctctaaaactttatatggttaaga 420  Q
    |||| ||| |||| || |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  662015 gtccggagtaagaggatgaagtttgtcgtgaaaatcaatgcacttttgaaaactaattagagtctagggtttagtctctaaaattttatatggttaaga 661917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 6778514 - 6778624
Alignment:
Q  63 ttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaacaaatgggacactgaattcg 162  Q
    ||||| ||||| ||||| || || |||||||||||||| || || |||||||||||||| |  |  || ||||| ||||| || |||||  |||||||||    
T  6778514 ttggcgaaggtgattgaatactgtaagaagcatgttgatgccgcgagttccgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaattcg 6778613  T
Q  163 taaaggttgat 173  Q
    | |||||||||    
T  6778614 tgaaggttgat 6778624  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 24817214 - 24817274
Alignment:
Q  61 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaa 121  Q
    ||||||| || ||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  24817214 tcttggcgaaagttattgagtattgcaagaagcatgttgaggctacaagttccgaagaaaa 24817274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 24406553 - 24406504
Alignment:
Q  55 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggct 104  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||||||||||    
T  24406553 gcaagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggct 24406504  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 24412655 - 24412704
Alignment:
Q  55 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggct 104  Q
    ||||| ||||| | |||||||| |||||||| ||||||||||||||||||    
T  24412655 gcaagatcttgacaaaggttatcgagtattgtaagaagcatgttgaggct 24412704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 8981943 - 8981988
Alignment:
Q  61 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgc 106  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  8981943 tcttggcgaaggtgattgagtattgcaagaagcatgttgaggctgc 8981988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 8991442 - 8991493
Alignment:
Q  55 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgc 106  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8991442 gcaagatcttggcgaaggtgattgagtattgcaagaagcatgttgacgctgc 8991493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 35390589 - 35390404
Alignment:
Q  61 tcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttccgatgaaaagctctttgatgatgaacttaa-------caaatgggaca 153  Q
    ||||||| ||||||||||||||||| || |||||||||||||| |  |||||||| ||||| | |||  ||||||| |||||        |  |||||||    
T  35390589 tcttggcgaaggttattgagtattgtaaaaagcatgttgaggccgggagttccgaagaaaaacccttacatgatgatcttaaggcttgggagttgggaca 35390490  T
Q  154 ctgaattcgtaaaggttgataatgttacgatcttcaatctcatctgggctgcaagctatctgaatatcaagagtctcttggatctt 239  Q
    |||||||| | ||||||||| | | |||| || || ||||||||| | |||||| |||| |||| ||||||||  | |||||||||    
T  35390489 ctgaattcatcaaggttgatcaggctacgctcctcgatctcatcttgtctgcaaactatttgaacatcaagagcttgttggatctt 35390404  T

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