View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4665_low_4 (Length: 236)
Name: NF4665_low_4
Description: NF4665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4665_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 13943073 - 13943304
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13943073 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcaaaccatctagaagattgtaggaaagattcaagtatttcaaatgtgaaagagactc |
13943172 |
T |
|
| Q |
101 |
caattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttga |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13943173 |
caattgaataggaatttgtcctcgaaaataacaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttca |
13943272 |
T |
|
| Q |
201 |
acattatttctactgaggttcaaatattgtaa |
232 |
Q |
| |
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| |||||||||||||| ||||||||||||||| |
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| T |
13943273 |
aaattatttctactgaagttcaaatattgtaa |
13943304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14027170 - 14027405
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14027170 |
caagaaattgcaagttggagagacctccaagttgatgaggaatcaaaccatctagaagattgttggaaagattcaagtatttcaaatgtgaaagagactc |
14027269 |
T |
|
| Q |
101 |
caattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttga |
200 |
Q |
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||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
14027270 |
caattgaataggaatttgtcctccaaaatgacaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctagtatagaattgccttca |
14027369 |
T |
|
| Q |
201 |
acattatttctactgaggttcaaatattgtaattgt |
236 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |
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| T |
14027370 |
aaattatttctactgaggttcaaatattgtaattgt |
14027405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14017182 - 14017417
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14017182 |
caagaaattgcaagttggagagatctccaagtcgatgaggaatcacaccatctagatgattgttggaaagatccaagtatttcaaatgtgaaagagactc |
14017281 |
T |
|
| Q |
101 |
caattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttga |
200 |
Q |
| |
|
||||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14017282 |
caattgaataggaatttgtcctccaagattgcaaattgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttca |
14017381 |
T |
|
| Q |
201 |
acattatttctactgaggttcaaatattgtaattgt |
236 |
Q |
| |
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| |||| ||||||||| ||||||||||||||||||| |
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| T |
14017382 |
aaattaattctactgaagttcaaatattgtaattgt |
14017417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 14112578 - 14112812
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| | |
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|
| T |
14112578 |
caagaaattgcaagttggagagatctccaagtcgattaggaatcacaccatctagacgattgttggaaagatttatgtatttcaaatgtgaaagagaccc |
14112677 |
T |
|
| Q |
101 |
caattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttga |
200 |
Q |
| |
|
|||| ||||||||||| |||| | ||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||| ||| ||| ||||||| | |
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| T |
14112678 |
caatggaataggaattcgtccgccaaaataacaatttgaaagatcaaggtttcttaggtttcttagagatccaaagaaacttgggatatctttgccttca |
14112777 |
T |
|
| Q |
201 |
acattatttctactgaggttcaaatattgtaattg |
235 |
Q |
| |
|
| |||||||| ||||||||||||||| | |||||| |
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|
| T |
14112778 |
aaattatttccactgaggttcaaatactttaattg |
14112812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 13860988 - 13860753
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
13860988 |
caagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccatctagatgattccacgaaagattcaagtatttcaaatgcgaaagagactc |
13860889 |
T |
|
| Q |
101 |
caattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttga |
200 |
Q |
| |
|
||||||||| |||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | | | | |
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| T |
13860888 |
aaattgaatatgaatttgtcctccaaaatgacaattagaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtagaatactctttcta |
13860789 |
T |
|
| Q |
201 |
acattatttctactgaggttcaaatattgtaattgt |
236 |
Q |
| |
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| |||||||| |||||||||||||||||||||||| |
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| T |
13860788 |
aaattatttccgctgaggttcaaatattgtaattgt |
13860753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 13470894 - 13470660
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
13470894 |
caagaaattgcaagttggagagatctccaagtcgatgaggaataacaccatctagacggttgtttgaaagattcaagtatttcaaatgagaaagagactc |
13470795 |
T |
|
| Q |
101 |
caattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttga |
200 |
Q |
| |
|
|||||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||||||||| || | | ||| ||||||||| | |
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|
| T |
13470794 |
gaattgaataggaatttgtcctccaagattgcaacctgaaagatcaaggtatcttaggtttcttagagatccaaagatacttaggatataattgccttca |
13470695 |
T |
|
| Q |
201 |
acattatttctactgaggttcaaatattgtaattg |
235 |
Q |
| |
|
| |||||||| || ||||||||||| | |||||| |
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|
| T |
13470694 |
aaattatttccaccaaggttcaaatactttaattg |
13470660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14086694 - 14086919
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
14086694 |
caagaaattgcaagttggagagatctccaagttgatgaggaatcaaaccatctagataattccatgaaagattcaagtatttcaaatgcaaaagagactc |
14086793 |
T |
|
| Q |
101 |
caattgaataggaatttg---tcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgcct |
197 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||| ||||||| |
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|
| T |
14086794 |
caattgaataggaatttgatctccttcaaaattgcaatatgaaagatcaaggtatcttaggtttctcagagatccaaagaaacttgggatatgattgcct |
14086893 |
T |
|
| Q |
198 |
tgaacattatttctactgaggttcaa |
223 |
Q |
| |
|
|||| || ||||||||| |||||||| |
|
|
| T |
14086894 |
tgaaaatcatttctacttaggttcaa |
14086919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 13890975 - 13890747
Alignment:
| Q |
1 |
caagaaattgcaagttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| |||||| |||| |||| ||||| ||||||||||||||||| |||| ||||| |
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|
| T |
13890975 |
caagaaattgcaagttggagagatttccaagt---tgaggaatcaaaccatccagatcattgccggaaattttcaagtatttcaaatggtaaagtgactc |
13890879 |
T |
|
| Q |
101 |
caattgaataggaatttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctggtatagaattgccttga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | | | | ||| | |
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|
| T |
13890878 |
aaattgaataggaatttgtcctccaaaaccgcaataagaaagatcaaggtatcttaggtttcttaaagatccaaagaaacctgggacatgactccctcta |
13890779 |
T |
|
| Q |
201 |
acattatttctactgaggttcaaatattgtaa |
232 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| |
|
|
| T |
13890778 |
aaattatttctgttgaggttcaaatattgtaa |
13890747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 13873096 - 13872929
Alignment:
| Q |
15 |
ttggagagatctccaagtcgttgaggaatcacaccatctagatgattgttggaaagattcaagtatttcaaatgtgaaagagactccaattgaataggaa |
114 |
Q |
| |
|
|||||||||| ||||||| | |||||||||| |||||| |||| ||| ||||||| |||| ||||||||||| | ||||||||| |||||||| | || |
|
|
| T |
13873096 |
ttggagagatttccaagttgatgaggaatcaaaccatcgagatcattcgaggaaagactcaaatatttcaaatgcggaagagactcaaattgaattgaaa |
13872997 |
T |
|
| Q |
115 |
tttgtcctcgaaaataagaatatgaaagatcaaggtatcttaggtttcttaaagatccaaagaaacct |
182 |
Q |
| |
|
||| ||| | ||| | || |||||| ||||||||||||| |||||||| ||| ||||| |||||| |
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|
| T |
13872996 |
tttttccaccaaagcgacaacgtgaaaggtcaaggtatcttatgtttcttagagaaccaaaaaaacct |
13872929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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