View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667-Insertion-1 (Length: 1005)
Name: NF4667-Insertion-1
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 734 - 964
Target Start/End: Original strand, 40636305 - 40636536
Alignment:
| Q |
734 |
aggagtctttttccaccactccttttccttatcagcagcaccttttactggtacatcagaagttgatggtcttggtgaaacttttgactcctttttcttc |
833 |
Q |
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| T |
40636305 |
aggagtctttttccaccactccttttccttatcagcagcaccttttactggtacatcagaaattgatggtcttggtgaaacttttgactcctttttcttc |
40636404 |
T |
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| Q |
834 |
ttc-ttttatccttagatcccaaagnnnnnnnnggtaactctactttcaggtagaaacctcgatcacgatcaattttcccatcatttttcttcacatgta |
932 |
Q |
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||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40636405 |
ttctttttatccttagatcccaaagaaaaaaaaggtaaccctactttcaggtagaaacctcgatcacgatcaattttcccatcatttttcttcacatgta |
40636504 |
T |
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| Q |
933 |
ccttcttatcatcaatcttcttgacaccagaa |
964 |
Q |
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| T |
40636505 |
ccttcttatcatcaatcttcttgacactagaa |
40636536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 342 - 590
Target Start/End: Original strand, 40635885 - 40636127
Alignment:
| Q |
342 |
ttcttaaaattctccaaatccaacatgggatttgatttggagtcctctaaagaagcataaaaatgtaacaccaacaaccatgaacatgaaattcgtatct |
441 |
Q |
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| T |
40635885 |
ttcttaaaattctccaaatccaacatgggatttgatttgaagtcctctaaagaagcataaaaatgtaacaccaacaaccatgaacatgaaattcgtatct |
40635984 |
T |
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| Q |
442 |
tacagttacaaacacatatactactgtcnnnnnnnnnnnnnnntacagacacatgtatttcctaagaaacagttgaatgttctgatctgaaactatacat |
541 |
Q |
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| T |
40635985 |
tacagttacaaacacata---tactgtc---aaaaaattaaaatacagatacatgtatttcctaagaaacaattgaatgttctgatctgaaactatacat |
40636078 |
T |
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| Q |
542 |
gctatgttaataaatttgacaaaaacagtgatttttatattattttgaa |
590 |
Q |
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| T |
40636079 |
gctatgttaataaatttcacaaaaacagtcatttttattttattttgaa |
40636127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 40635519 - 40635716
Alignment:
| Q |
5 |
acacattttccagtaactccagaagcaaacttgtcgaattcaatggaagttacaatgaaacaagtcgttctcagactgcttnnnnnnnngttgttctcag |
104 |
Q |
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| T |
40635519 |
acacatttttcagtaactccagaagcaaacttgtcgaattcaatggaagttacaatgaaacaagtagttctcagactgcttaaaaaaaagttgttctcag |
40635618 |
T |
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| Q |
105 |
atggcttgtagcagagtttatgtgaaaataaagcttgcaagtgccatgactatgatgaaatcacatagtactttgtttcgtcgaaggcatcgattatc |
202 |
Q |
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| T |
40635619 |
atggcttgtagcagagtttatgtgaaaataaagcttgcaagtgccatgactatgatgaaatcacatagtactttgtttcatcaaaggcatcgattatc |
40635716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 232 - 344
Target Start/End: Original strand, 40635746 - 40635858
Alignment:
| Q |
232 |
gcgaaacaaagaccagcaccgacctccaccattctcacgcctgcatttcatccaaaagttaattagtactctatgcgaccttaaatataagcaaaaaggc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635746 |
gcgaaacaaagaccagcaccgacctccaccattctcacgcctgcatttcatccaaaagttaattagtactctatgcgaccttaaatataagcaaaaaggc |
40635845 |
T |
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| Q |
332 |
atatatgttgttc |
344 |
Q |
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|| |||||||||| |
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| T |
40635846 |
atgtatgttgttc |
40635858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 678 - 734
Target Start/End: Original strand, 40636225 - 40636281
Alignment:
| Q |
678 |
atagagcttttcatgcttccattactgttgctactggatgctgcactagtgtcgtca |
734 |
Q |
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| T |
40636225 |
atagagcttttcatgcttccattactgttgctactggatgctgcactagtgtcgtca |
40636281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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