View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667-Insertion-10 (Length: 521)

Name: NF4667-Insertion-10
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667-Insertion-10
NF4667-Insertion-10
[»] chr6 (6 HSPs)
chr6 (178-350)||(16783655-16783826)
chr6 (28-92)||(16873556-16873620)
chr6 (379-471)||(16984025-16984111)
chr6 (167-245)||(16571888-16571966)
chr6 (39-92)||(16571563-16571616)
chr6 (163-209)||(16832437-16832483)
[»] chr2 (8 HSPs)
chr2 (178-451)||(32791984-32792251)
chr2 (246-470)||(14535470-14535697)
chr2 (178-258)||(21628259-21628338)
chr2 (28-92)||(32791652-32791716)
chr2 (290-451)||(21628350-21628516)
chr2 (246-338)||(14530851-14530943)
chr2 (28-92)||(21627911-21627975)
chr2 (141-172)||(21628173-21628204)
[»] scaffold0256 (3 HSPs)
scaffold0256 (28-92)||(12099-12163)
scaffold0256 (167-245)||(11797-11875)
scaffold0256 (141-172)||(11906-11937)
[»] chr7 (2 HSPs)
chr7 (28-95)||(48300120-48300187)
chr7 (192-233)||(48299792-48299833)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 350
Target Start/End: Complemental strand, 16783826 - 16783655
Alignment:
Q  178 agaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttgatatgaattacaatgcattggcattttgtcaat 277  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||||||||||| ||| |||||||| | ||||||||||||||||    
T  16783826 agaaatttgatttgattattgcctgcatattgctctgttatctttgctgttgaattaattacatttgaaatggattacaattc-ttggcattttgtcaat 16783728  T
Q  278 attctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctgttatatt 350  Q
     |||||||||  ||| || ||| ||||| | ||| || | | |||||||||| ||| ||||||| ||||||||    
T  16783727 gttctgtattttatgagagtacgttatgcgataagcatcactcatgtttgaataccatgttccccgttatatt 16783655  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 16873556 - 16873620
Alignment:
Q  28 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 92  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||    
T  16873556 cacatgactgtctgtctgaactttatttcggtggaaggttgaaagaattgcttgcacaaggagtt 16873620  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 471
Target Start/End: Complemental strand, 16984111 - 16984025
Alignment:
Q  379 gatattgtctactgtcctagacactaacctgatagactaaattcttgatattgttaattgaaatttaatatcttgacgtgttactgatttttt 471  Q
    |||||||| |||||||||||||||||||||||| || ||| ||||||      ||||||| ||||||||||||||||||||| || |||||||    
T  16984111 gatattgtttactgtcctagacactaacctgatcgagtaatttcttg------ttaattggaatttaatatcttgacgtgtttctaatttttt 16984025  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 16571888 - 16571966
Alignment:
Q  167 cagttttgaatagaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttga 245  Q
    |||||||||| |||||| |||||||| |||| | |||||||| |  |||||||||| || |||||||||||||||||||    
T  16571888 cagttttgaacagaaatctgatttgaatattagttgcatatttccttgttctcttttctgctgaattaattacatttga 16571966  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 16571563 - 16571616
Alignment:
Q  39 ctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 92  Q
    |||||| |||||||||| | |||||||||||||||| |||||| ||||||||||    
T  16571563 ctgtctgaactttattctgctggaaggttgaaagaattgctcgcacaaggagtt 16571616  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 16832483 - 16832437
Alignment:
Q  163 attgcagttttgaatagaaatttgatttgattattggctgcatattg 209  Q
    ||||||||| |||| |||||||||||||||||||| | |||||||||    
T  16832483 attgcagttatgaacagaaatttgatttgattattagttgcatattg 16832437  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 451
Target Start/End: Original strand, 32791984 - 32792251
Alignment:
Q  178 agaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttgatatgaattacaatgcattggcattttgtcaat 277  Q
    |||| |||||||||||||||| ||||| | |||||  |||||||| ||  ||||||||||||| |||||||| |||||||| | ||||||||||||||||    
T  32791984 agaattttgatttgattattgcctgca-actgctccattctctttactgttgaattaattacacttgatatggattacaattc-ttggcattttgtcaat 32792081  T
Q  278 attctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctgttata--ttgtgttaatattttacttaacttcgt 375  Q
     || ||||||  |||||| |||| |||| |||||||| | |||||| ||||||||| ||||||   |||||  ||||| | |||||||| |||||| | |    
T  32792082 gttatgtattttatgtgagtacaatatgcgttaaacatcacacatgcttgaacaccgtgttccgcattatattttgtgatgatattttaattaactgctt 32792181  T
Q  376 ttggatattgtctactgtcctagacactaacctgatagactaaattcttgatattgttaattgaaatttaatatct 451  Q
    || ||||||||||  |||| | ||||| |     ||| | ||| ||||||||||||||||||||||||| ||||||    
T  32792182 ttagatattgtctcttgtcttggacacga-----ata-agtaatttcttgatattgttaattgaaatttcatatct 32792251  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 470
Target Start/End: Original strand, 14535470 - 14535697
Alignment:
Q  246 tatgaattacaatgcattggcattttgtcaatattctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctg-- 343  Q
    |||| |||| ||||||||| |||||||||| | |||||||||  ||| |  ||||||||||||| |||  | |||| | |||||||||||||||| ||      
T  14535470 tatggattaaaatgcattgacattttgtcagtgttctgtattttatgag--tacattatgtgtttaacgccacacaggcttgaacaccttgttccttggt 14535567  T
Q  344 ttatattgtgttaatattttacttaacttcgtttggatattgtctactgtcctagacac---taacctgatagactaaattcttgatattgttaattgaa 440  Q
     ||| ||||| | |||||||||| |||| | || |||||||||||  |||| |||||||   || |||| |||| ||| ||||||||| ||||||||| |    
T  14535568 gtattttgtggtgatattttactcaactactttcggatattgtctcttgtcatagacacttatagcctggtagagtaatttcttgataatgttaattgga 14535667  T
Q  441 atttaatatcttgacgtgttactgattttt 470  Q
    | ||||||| ||| ||||||||| ||||||    
T  14535668 acttaatattttggcgtgttactaattttt 14535697  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 21628259 - 21628338
Alignment:
Q  178 agaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttgatatgaattacaat 258  Q
    ||||||||||||||||||||| ||||| | ||||| ||||||||||||  |||||||||||||||||||||| ||||||||    
T  21628259 agaaatttgatttgattattgcctgca-actgctccgttctctttgctgttgaattaattacatttgatatggattacaat 21628338  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 32791652 - 32791716
Alignment:
Q  28 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 92  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  32791652 cacatgactgtctgtctgaactttatcccggtggaagggtgaaagaattgctcgcacaaggagtt 32791716  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 451
Target Start/End: Original strand, 21628350 - 21628516
Alignment:
Q  290 atgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgttccctgttatattgtgtta--atattttacttaacttcgtttggatattgtc 387  Q
    |||||| |||||||||  ||||||| | |||||| ||||||||  |||||||  ||||||| ||| |  |||| |||||||||| | ||||||||| |||    
T  21628350 atgtgagtacattatgcattaaacatcacacatgcttgaacacggtgttccccattatattttgtgatgatatattacttaactgcttttggatatcgtc 21628449  T
Q  388 tactgtcctagacactaa---cctgatagactaaattcttgatattgttaattgaaatttaatatct 451  Q
    |  |||| ||||||||||   | ||||||| ||| || |||||||||||||||| ||||| ||||||    
T  21628450 tcttgtcttagacactaatatcttgatagagtaatttgttgatattgttaattggaatttcatatct 21628516  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 14530851 - 14530943
Alignment:
Q  246 tatgaattacaatgcattggcattttgtcaatattctgtattcaatgtgaatacattatgtgttaaacaacgcacatgtttgaacaccttgtt 338  Q
    |||| |||| ||| |||||||||||||||||| |||||||||  |||||| |||||||||||||  ||| | |||||| |||| |||||||||    
T  14530851 tatggattaaaatacattggcattttgtcaatgttctgtattttatgtgagtacattatgtgtttgacaccacacatgcttgagcaccttgtt 14530943  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 21627911 - 21627975
Alignment:
Q  28 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 92  Q
    ||||||| ||||||||| |||||||| ||||||||||| ||| |||| |||||| ||||||||||    
T  21627911 cacatgaatgtctgtctgaactttatcccggtggaagggtgagagaattgctcgcacaaggagtt 21627975  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 172
Target Start/End: Original strand, 21628173 - 21628204
Alignment:
Q  141 tttaaaatcaatgttgatctgaattgcagttt 172  Q
    ||||||||||||||||||||||||||||||||    
T  21628173 tttaaaatcaatgttgatctgaattgcagttt 21628204  T

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Target: scaffold0256 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 12163 - 12099
Alignment:
Q  28 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 92  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  12163 cacatgactgtcagtctgaactttattccggtggaaggttgaaagaattgctcatacaaggagtt 12099  T

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Target: scaffold0256; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 11875 - 11797
Alignment:
Q  167 cagttttgaatagaaatttgatttgattattggctgcatattgctctgttctctttgcttctgaattaattacatttga 245  Q
    |||||||||| ||||||||||||||| ||||  ||||||||||| ||||||||||| || |||||| ||||||||||||    
T  11875 cagttttgaacagaaatttgatttgaatattaactgcatattgccctgttctcttttctgctgaatcaattacatttga 11797  T

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Target: scaffold0256; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 172
Target Start/End: Complemental strand, 11937 - 11906
Alignment:
Q  141 tttaaaatcaatgttgatctgaattgcagttt 172  Q
    ||||||||||||||||||||||||||||||||    
T  11937 tttaaaatcaatgttgatctgaattgcagttt 11906  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 48300187 - 48300120
Alignment:
Q  28 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtttca 95  Q
    |||||| |||| ||||| |||||||||| |||||| || ||||||||||||| | |||||||||||||    
T  48300187 cacatggctgtttgtctgaactttattctggtggacgggtgaaagaactgcttgcacaaggagtttca 48300120  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 48299833 - 48299792
Alignment:
Q  192 attattggctgcatattgctctgttctctttgcttctgaatt 233  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  48299833 attattggctgcatattgctctgttctctttgttgctgaatt 48299792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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