View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667-Insertion-11 (Length: 514)

Name: NF4667-Insertion-11
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667-Insertion-11
NF4667-Insertion-11
[»] chr4 (17 HSPs)
chr4 (12-511)||(7766231-7766734)
chr4 (87-350)||(7787147-7787413)
chr4 (286-398)||(7787538-7787651)
chr4 (12-74)||(7787053-7787116)
chr4 (26-82)||(7908870-7908927)
chr4 (81-133)||(7237112-7237164)
chr4 (278-338)||(7793670-7793730)
chr4 (283-338)||(7816831-7816886)
chr4 (159-243)||(7787449-7787533)
chr4 (26-66)||(7878951-7878991)
chr4 (266-405)||(37826032-37826172)
chr4 (318-379)||(7772884-7772946)
chr4 (26-71)||(7773234-7773279)
chr4 (26-71)||(7801211-7801256)
chr4 (26-71)||(7814051-7814096)
chr4 (26-71)||(7823543-7823588)
chr4 (304-404)||(50669901-50670002)
[»] chr7 (1 HSPs)
chr7 (301-367)||(48884766-48884832)


Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 511
Target Start/End: Original strand, 7766231 - 7766734
Alignment:
Q  12 ccttctgcgacagtc-atccgaagttgtcgtgtataccgagtctctactttcactctctggtga-aatgagcacaatcaagaacaatgaggttgtgaaat 109  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7766231 ccttctgcaacagtccatccgaagttgtcgtgtataccgagtctctactttcactctctggtgacaatgagcacaatcaagaacaatgaggttgtgaaat 7766330  T
Q  110 attctacttcattgttttatttatgttgaattatgaactcttgagtcggtgcatttgtaacatgtggtaagctggtatgttttgaaatgtttattagttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  7766331 attctacttcattgttttatttatgttgaattatgaactcttgagtcgctgcatttgtaacatgtgctaagctgctatgttttgaaatgtttattagttt 7766430  T
Q  210 agtatttgtcatattcttgtcagaaatattgac-actttgtttctttgtttgtatggttcaatgttgtttatggatgtgtaactggattggattctaaat 308  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||    
T  7766431 agtatttgtcatattcttgtcagaaatattgacaactttgtttctttgtttgtatgcttcaatgttgtttatgcatgtgtaactggattgcattctaaat 7766530  T
Q  309 ttatgttattgtcactacttgaaattgtttcatgtggtaaattaatcttttgagtttatgc-tgttgaaggatatataaggttttgctctttaatttcta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7766531 ttatgttattgtcactacttgaaattgtttcatgtggtaaattaatcttttgagtttatgcatgttgaaggatatataaggttttgctctttaatttcta 7766630  T
Q  408 ctttagctcttgccatttctctgttttcaaccatgatccccaatagtgtttcagttacaagttttaacacttcatttaatgtataatgtaaatattcact 507  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766631 ctttagctcttgccatttctctgttttcaactatgatcctaaatagtgtttcagttacaagttttaacacttcatttaatgtataatgtaaatattcact 7766730  T
Q  508 ggca 511  Q
    ||||    
T  7766731 ggca 7766734  T

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Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 87 - 350
Target Start/End: Original strand, 7787147 - 7787413
Alignment:
Q  87 caagaacaatgaggttgtgaaatattctacttcattgttttatttatgttgaattatgaactcttgagtcggtgcatttgtaacatgtggtaagctggta 186  Q
    |||||||||||||||||||||||| |||  || |   |||  || || ||| ||||||||||||||||| | |||||||||||| |||| | ||||| ||    
T  7787147 caagaacaatgaggttgtgaaatactctcatttaccatttccttcatattgtattatgaactcttgagtggctgcatttgtaacttgtgctgagctgcta 7787246  T
Q  187 tgttttgaaatgtttattagtttagtatttgtcatattcttgtcagaaatattgacactttgtttctttgtttgtatggttcaatgttgtttatggatgt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| || |||||| | |||| ||||    
T  7787247 tgttttgaaatgtttattagtttagtatttgtcatattcttgtcagaaatattgacaactcgtttctttgtttgtatgcttaaatgttatgtatgcatgt 7787346  T
Q  287 gtaactggattggattctaaatttatgttattgtcactactt---gaaattgtttcatgtggtaaat 350  Q
    |||||||||||| |||||||||||||||||||||||||||||   |||||| |||||||||||||||    
T  7787347 gtaactggattgcattctaaatttatgttattgtcactacttgaagaaattatttcatgtggtaaat 7787413  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 398
Target Start/End: Original strand, 7787538 - 7787651
Alignment:
Q  286 tgtaactggattggattctaaatttatgttattgtcactacttgaaattgtttcatgtggtaaattaatcttttgagtttatgc-tgttgaaggatatat 384  Q
    ||||| ||||||| ||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||  |||||| ||||  |||||||||   |     
T  7787538 tgtaattggattgcattctaaatgtatgttgttgtcactacttgtaattgtttcatatggtaaattaatctgatgagttaatgcacgttgaaggaagaag 7787637  T
Q  385 aaggttttgctctt 398  Q
    ||||||||||||||    
T  7787638 aaggttttgctctt 7787651  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 7787053 - 7787116
Alignment:
Q  12 ccttctgcgacagtc-atccgaagttgtcgtgtataccgagtctctactttcactctctggtga 74  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  7787053 ccttctgcaacagtccatccgaagttgtcgtgtatacagagtctctactttcactctccggtga 7787116  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 7908870 - 7908927
Alignment:
Q  26 catccgaagttgtcgtgtataccgagtctctactttcactctctggtga-aatgagca 82  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||    
T  7908870 catccgaagttgtcatgtataccgagtctctgctttcactccctggtgacaatgagca 7908927  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 7237164 - 7237112
Alignment:
Q  81 cacaatcaagaacaatgaggttgtgaaatattctacttcattgttttatttat 133  Q
    ||||| |||||||||||| ||||||||||||||| |||||||||||| |||||    
T  7237164 cacaaacaagaacaatgatgttgtgaaatattctccttcattgttttctttat 7237112  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 7793730 - 7793670
Alignment:
Q  278 tatggatgtgtaactggattggattctaaatttatgttattgtcactacttgaaattgttt 338  Q
    |||| |||||||||||||||| |||||||||  ||||| |||||||| |||||||||||||    
T  7793730 tatgcatgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttt 7793670  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 7816886 - 7816831
Alignment:
Q  283 atgtgtaactggattggattctaaatttatgttattgtcactacttgaaattgttt 338  Q
    |||||||||||||||| |||||||||  ||||| |||||||| |||||||||||||    
T  7816886 atgtgtaactggattgaattctaaatgcatgttgttgtcactgcttgaaattgttt 7816831  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 7787449 - 7787533
Alignment:
Q  159 tgcatttgtaacatgtggtaagctggtatgttttgaaatgtttattagtttagtatttgtcatattcttgtcagaaatattgaca 243  Q
    ||||||||||||||| | | ||||| |||||  ||||||||||||| ||||| | |||||||||| ||| ||  |||||||||||    
T  7787449 tgcatttgtaacatgagctgagctgctatgtcatgaaatgtttattcgtttactgtttgtcatatgcttatcgaaaatattgaca 7787533  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 7878951 - 7878991
Alignment:
Q  26 catccgaagttgtcgtgtataccgagtctctactttcactc 66  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  7878951 catccgaagttgtcatgtatacggagtctctactttcactc 7878991  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 405
Target Start/End: Complemental strand, 37826172 - 37826032
Alignment:
Q  266 ttcaatgttgtttatggatgtgtaactggattggattctaaatttatgttattgtcactacttgaaattgtttcatgtggtaaattaatcttttgagttt 365  Q
    |||| |||| |||||| || ||||| |||||||  |||||| | |||||| ||||||||   |||||| |||| || |||||||||||| |  |||| ||    
T  37826172 ttcattgttatttatgcatatgtaattggattgagttctaattgtatgtttttgtcactgtctgaaatggttttatatggtaaattaatttgatgaggtt 37826073  T
Q  366 atgc-tgttgaaggatatataaggttttgctctttaatttc 405  Q
    |||| | |||||||| | ||||||||||| ||| |||||||    
T  37826072 atgcatattgaaggaaaaataaggttttgttctctaatttc 37826032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 7772946 - 7772884
Alignment:
Q  318 tgtcactacttgaaattgtttcatgtggtaaattaatcttttgagtttatgc-tgttgaagga 379  Q
    ||||||| ||||||||||||| || ||||||||||||||  ||||||||| | ||||||||||    
T  7772946 tgtcactgcttgaaattgttttatatggtaaattaatctgatgagtttatacatgttgaagga 7772884  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 7773279 - 7773234
Alignment:
Q  26 catccgaagttgtcgtgtataccgagtctctactttcactctctgg 71  Q
    |||||||||||||| ||||||| |||||||| ||||||||| ||||    
T  7773279 catccgaagttgtcatgtatactgagtctctgctttcactccctgg 7773234  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 7801211 - 7801256
Alignment:
Q  26 catccgaagttgtcgtgtataccgagtctctactttcactctctgg 71  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  7801211 catccaaagttgtcatgtataccgagtctctgctttcactccctgg 7801256  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 7814051 - 7814096
Alignment:
Q  26 catccgaagttgtcgtgtataccgagtctctactttcactctctgg 71  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  7814051 catccaaagttgtcatgtataccgagtctctgctttcactccctgg 7814096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 7823543 - 7823588
Alignment:
Q  26 catccgaagttgtcgtgtataccgagtctctactttcactctctgg 71  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  7823543 catccaaagttgtcatgtataccgagtctctgctttcactccctgg 7823588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 50669901 - 50670002
Alignment:
Q  304 taaatttatgttattgtcactacttgaaattgtttcatgtggtaaattaatcttttgagtttatgc-tgttgaaggatatataaggttttgctctttaat 402  Q
    ||||| |||||| |||| ||| ||||||||||||| || ||||||| ||||||  | | ||||||| |||||||||| | | ||||||||| ||| ||||    
T  50669901 taaatgtatgttgttgtgactgcttgaaattgttttatatggtaaactaatctggttaatttatgcatgttgaaggaaaaagaaggttttgttctctaat 50670000  T
Q  403 tt 404  Q
    ||    
T  50670001 tt 50670002  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 48884766 - 48884832
Alignment:
Q  301 ttctaaatttatgttattgtcactacttgaaattgtttcatgtggtaaattaatcttttgagtttat 367  Q
    |||||||||| ||||  ||||| | ||||||||||||| |||| ||||||||||||  |||||||||    
T  48884766 ttctaaatttctgttgctgtcattgcttgaaattgttttatgtcgtaaattaatctgatgagtttat 48884832  T

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