View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667-Insertion-12 (Length: 497)
Name: NF4667-Insertion-12
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 123 - 310
Target Start/End: Complemental strand, 28713657 - 28713470
Alignment:
| Q |
123 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagcca |
222 |
Q |
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| T |
28713657 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagctggcctagcca |
28713558 |
T |
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| Q |
223 |
tgaatgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtgtttcctgtcc |
310 |
Q |
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| T |
28713557 |
tgaatgcttgccaagtctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtgtttcctgtcc |
28713470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 377 - 497
Target Start/End: Complemental strand, 28713401 - 28713281
Alignment:
| Q |
377 |
actcctccatccaacataccacccttcaactgttccactatatcataacataagggtcccctaagatgcagccgagtgctgacttagaaggagagtatta |
476 |
Q |
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| T |
28713401 |
actcctccatccaacataccacccttcaactgttccactatatcataacataagggtcccctaagatgcagccgagtgctgacttagaaggagagtatta |
28713302 |
T |
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| Q |
477 |
agaaggaggtttggggttcga |
497 |
Q |
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| T |
28713301 |
agaaggaggttcggggttcga |
28713281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 28713771 - 28713689
Alignment:
| Q |
10 |
tgtatgtgtgttagtgctctgtagattttaacattaatagattcttttctcggaagttatcatcgcgatgaattcatgcaatt |
92 |
Q |
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| T |
28713771 |
tgtatgtgtgttagtgctctgtagattttaacattaatagattcttttctcggaagttatcatcgcgatgaattcatgcaatt |
28713689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 127 - 300
Target Start/End: Original strand, 48904681 - 48904854
Alignment:
| Q |
127 |
aatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagccatgaa |
226 |
Q |
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|||||||||||||||| ||| |||||||||||||||| ||| ||| | ||||||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
48904681 |
aatacctaacaccaagtatgagagctgcttccctcttcgtcatagtaggctgaaaaccaccttcataaaatttacgcaatgcaggtggtctagctttgaa |
48904780 |
T |
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| Q |
227 |
tgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtg |
300 |
Q |
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| T |
48904781 |
tgcttgccaagcctggataccatatttaccggcatatgctgcagcagccacagcaatcccagcaattaaaggtg |
48904854 |
T |
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