View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667-Insertion-15 (Length: 318)

Name: NF4667-Insertion-15
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667-Insertion-15
NF4667-Insertion-15
[»] chr6 (12 HSPs)
chr6 (117-318)||(13696806-13697007)
chr6 (134-313)||(13725847-13726026)
chr6 (30-85)||(5069947-5070002)
chr6 (153-274)||(13672951-13673072)
chr6 (36-86)||(862906-862955)
chr6 (30-87)||(9910572-9910630)
chr6 (37-86)||(674135-674184)
chr6 (36-83)||(8050987-8051034)
chr6 (36-71)||(9910516-9910551)
chr6 (38-85)||(26296295-26296342)
chr6 (36-86)||(16260707-16260757)
chr6 (55-88)||(31974911-31974944)
[»] chr4 (11 HSPs)
chr4 (30-86)||(38562204-38562260)
chr4 (36-88)||(23673440-23673492)
chr4 (36-92)||(33508532-33508588)
chr4 (36-86)||(38562132-38562182)
chr4 (36-86)||(39993126-39993176)
chr4 (23-91)||(20291783-20291851)
chr4 (36-75)||(21861068-21861107)
chr4 (36-75)||(21916931-21916970)
chr4 (23-85)||(32583788-32583850)
chr4 (36-88)||(6371999-6372051)
chr4 (39-79)||(41622110-41622150)
[»] chr5 (15 HSPs)
chr5 (31-86)||(14509900-14509955)
chr5 (36-85)||(20269526-20269575)
chr5 (37-90)||(6241363-6241416)
chr5 (37-86)||(12399341-12399390)
chr5 (36-85)||(28499866-28499914)
chr5 (30-86)||(28499788-28499844)
chr5 (55-86)||(40772975-40773006)
chr5 (40-90)||(20269445-20269494)
chr5 (56-86)||(39063074-39063104)
chr5 (44-86)||(42698664-42698706)
chr5 (28-85)||(8355556-8355613)
chr5 (36-88)||(7065669-7065721)
chr5 (38-86)||(11089295-11089343)
chr5 (57-85)||(25840579-25840607)
chr5 (23-75)||(29961536-29961588)
[»] chr3 (9 HSPs)
chr3 (31-86)||(29212849-29212904)
chr3 (36-85)||(30122039-30122088)
chr3 (43-86)||(19790814-19790857)
chr3 (33-86)||(16867624-16867677)
chr3 (36-88)||(55121258-55121310)
chr3 (36-91)||(29212927-29212982)
chr3 (36-86)||(18093784-18093834)
chr3 (36-86)||(18093862-18093912)
chr3 (37-91)||(30121952-30122006)
[»] chr2 (12 HSPs)
chr2 (36-92)||(33956370-33956426)
chr2 (36-86)||(11565007-11565057)
chr2 (36-86)||(32516218-32516268)
chr2 (42-86)||(31719187-31719231)
chr2 (28-86)||(27279493-27279551)
chr2 (28-86)||(41517440-41517498)
chr2 (37-86)||(9895636-9895685)
chr2 (37-86)||(25997402-25997451)
chr2 (40-85)||(34138783-34138828)
chr2 (30-86)||(9733544-9733600)
chr2 (38-86)||(32516140-32516188)
chr2 (36-87)||(32965733-32965785)
[»] chr1 (15 HSPs)
chr1 (36-85)||(1609971-1610020)
chr1 (23-86)||(24419604-24419667)
chr1 (33-87)||(5700115-5700169)
chr1 (36-86)||(8900800-8900850)
chr1 (36-86)||(35489203-35489253)
chr1 (36-86)||(36618892-36618942)
chr1 (36-86)||(49166692-49166742)
chr1 (33-78)||(4821260-4821305)
chr1 (33-78)||(4833060-4833105)
chr1 (30-83)||(8900872-8900925)
chr1 (36-86)||(1610034-1610083)
chr1 (36-86)||(41944776-41944826)
chr1 (38-86)||(37247658-37247706)
chr1 (37-85)||(38133475-38133523)
chr1 (58-94)||(49805133-49805169)
[»] chr8 (14 HSPs)
chr8 (30-90)||(30358659-30358718)
chr8 (38-85)||(9428069-9428116)
chr8 (43-86)||(20694510-20694553)
chr8 (36-86)||(1784173-1784223)
chr8 (36-85)||(1157011-1157060)
chr8 (36-85)||(2602060-2602109)
chr8 (36-73)||(30358596-30358633)
chr8 (37-86)||(30542546-30542595)
chr8 (30-86)||(1784095-1784151)
chr8 (30-86)||(6590861-6590917)
chr8 (37-85)||(11334251-11334299)
chr8 (36-88)||(40737906-40737958)
chr8 (36-88)||(44329161-44329213)
chr8 (28-88)||(44803817-44803877)
[»] chr7 (12 HSPs)
chr7 (36-81)||(2635681-2635726)
chr7 (31-77)||(15996195-15996241)
chr7 (33-79)||(47718600-47718645)
chr7 (43-88)||(3485913-3485958)
chr7 (36-85)||(12810392-12810441)
chr7 (41-86)||(13468922-13468967)
chr7 (30-71)||(18701047-18701088)
chr7 (32-85)||(40992811-40992864)
chr7 (30-86)||(2399778-2399834)
chr7 (36-88)||(16892964-16893015)
chr7 (39-86)||(21955421-21955469)
chr7 (56-88)||(29046363-29046395)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 13696806 - 13697007
Alignment:
Q  117 aataataaaagattgtataaatgacatacctctggctccaattcataaaaagtattagcaagaacccaatcaacttgatcaatcattgaaaattggttag 216  Q
    |||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13696806 aataattaaacattgtatgagtgacatacctctggctccaattcataaaaagtattagcaagaacccaatcaacttgatcaatcattgaaaattggttag 13696905  T
Q  217 tcaaaatatcaaagtaaccaggatgagttccatatttatacaaaaaagaaggcaaatcagcagcttcaaggttaggcaatccaggtaacacaatttcttt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13696906 tcaaaatatcaaagtaaccaggatgagttccatatttatacaaaaaagaaggcaaatcagcagcttcaagcttaggcaatccaggtaacacaatttcttt 13697005  T
Q  317 ct 318  Q
    ||    
T  13697006 ct 13697007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 313
Target Start/End: Original strand, 13725847 - 13726026
Alignment:
Q  134 taaatgacatacctctggctccaattcataaaaagtattagcaagaacccaatcaacttgatcaatcattgaaaattggttagtcaaaatatcaaagtaa 233  Q
    ||||| || |||||||||||| | ||||||||| || ||  |||||||||||||||||||||||||| | ||||||||||| || | |||||||||||||    
T  13725847 taaatcacttacctctggctcaagttcataaaacgtgttgacaagaacccaatcaacttgatcaatcttggaaaattggtttgtaagaatatcaaagtaa 13725946  T
Q  234 ccaggatgagttccatatttatacaaaaaagaaggcaaatcagcagcttcaaggttaggcaatccaggtaacacaatttc 313  Q
    |||||||  |||||||||| |||||| |||||||||||||||||| ||| |||  | |||||||||||||||||||||||    
T  13725947 ccaggataggttccatattgatacaagaaagaaggcaaatcagcatcttgaagcgttggcaatccaggtaacacaatttc 13726026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 5070002 - 5069947
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  5070002 cggatacattaattattcaatgtatctaaaaagttgttttttgcttataaatgtga 5069947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 13672951 - 13673072
Alignment:
Q  153 tccaattcataaaaagtattagcaagaacccaatcaacttgatcaatcattgaaaattggttagtcaaa-atatcaaagtaaccaggatgagttccatat 251  Q
    |||| ||||||||| || || ||||||| ||||||| ||| | ||||  |||||||||| || | |||  ||||||||||| || |||| || |||||||    
T  13672951 tccagttcataaaatgtgtttgcaagaatccaatcagctttaccaatgtttgaaaattgatt-gacaactatatcaaagtagcctggataagatccatat 13673049  T
Q  252 ttatacaaaaaagaaggcaaatc 274  Q
    |||||||||||||||||||||||    
T  13673050 ttatacaaaaaagaaggcaaatc 13673072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 862906 - 862955
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  862906 cattaattattcaatgtatctaaaaaa-tgttttttgcttataaatgtgac 862955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 9910572 - 9910630
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaat-tgttttttacttataaatgtgact 87  Q
    ||||| |||||||||||||||||| |||||||||   ||||||||||||||||||||||    
T  9910572 cggatacattaattattcaatatacctaaaaaatcatttttttacttataaatgtgact 9910630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 674135 - 674184
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||| |||||||||  ||||||||||||||||||| ||||||||||||||    
T  674135 attagttattcaatgaatctaaaaaattgttttttgcttataaatgtgac 674184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 8051034 - 8050987
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgt 83  Q
    ||||||||||||||||||| ||||||||| ||||||  ||||||||||    
T  8051034 cattaattattcaatatatttaaaaaattattttttggttataaatgt 8050987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 9910551 - 9910516
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgtttttt 71  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9910551 cattaattattcaatatttctaaaaaattgtttttt 9910516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 26296295 - 26296342
Alignment:
Q  38 ttaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||||| ||| ||||||||  ||||||||||||||||||||    
T  26296295 ttaattattcaatgtatttaaaaaatcattttttacttataaatgtga 26296342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 16260707 - 16260757
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||||||  ||||||||  |||||| ||||||||||||||    
T  16260707 cattaattattcaatatacgtaaaaaataatttttttcttataaatgtgac 16260757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 31974944 - 31974911
Alignment:
Q  55 ctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||||||||||||||| ||||||||||||||||    
T  31974944 ctaaaaaattgttttttgcttataaatgtgactg 31974911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 38562204 - 38562260
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  38562204 cggatacattaattattcaatgtatctaaaaaattgttttttgcttataaatgtgac 38562260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 23673440 - 23673492
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    |||||||||||||||||| ||||||| || |||||| ||||||||||||||||    
T  23673440 cattaattattcaatatacctaaaaagttattttttgcttataaatgtgactg 23673492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 33508588 - 33508532
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactgaaag 92  Q
    ||||| ||||||||| || ||||||||||||||||| |||||||||||| |||||||    
T  33508588 cattagttattcaatgtacctaaaaaattgttttttgcttataaatgtgtctgaaag 33508532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 38562182 - 38562132
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| ||||||| || ||||||||| ||||||||||||||    
T  38562182 cattaattattcaatgtatctaacaagttgttttttgcttataaatgtgac 38562132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 39993126 - 39993176
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||||||||  ||||||||| || |||||||||||||||||||||    
T  39993126 cattaattattcaatgaatctaaaaagttattttttacttataaatgtgac 39993176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 20291851 - 20291783
Alignment:
Q  23 tataaatcggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgactgaaa 91  Q
    |||| ||| ||| ||||| ||||| ||||||  |||||| ||||||||| |||||||||||||||||||    
T  20291851 tatagatcagatacattagttatttaatatacttaaaaagttgttttttgcttataaatgtgactgaaa 20291783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 21861107 - 21861068
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttactt 75  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  21861107 cattaattattcaatgtatctaaaaaattgttgtttactt 21861068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 21916970 - 21916931
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttactt 75  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  21916970 cattaattattcaatgtatctaaaaaattgttgtttactt 21916931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 32583850 - 32583788
Alignment:
Q  23 tataaatcggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    |||| ||| ||| ||||||||||| ||||||  |||||||||||||||||| |||||| ||||    
T  32583850 tatatatctgatacattaattattgaatataattaaaaaattgttttttacctataaacgtga 32583788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 6371999 - 6372051
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||| ||||| ||| || ||||||||||||||||| ||||||||| ||||||    
T  6371999 cattagttattaaatgtacctaaaaaattgttttttgcttataaatatgactg 6372051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 41622150 - 41622110
Alignment:
Q  39 taattattcaatatatctaaaaaattgttttttacttataa 79  Q
    |||||||||||| |||||||||||| | |||||||||||||    
T  41622150 taattattcaatgtatctaaaaaatagatttttacttataa 41622110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 14509900 - 14509955
Alignment:
Q  31 ggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  14509900 ggatacattaattattcaatatatctaaaaaattattttttatttataaatgtgac 14509955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 20269526 - 20269575
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  20269526 cattaattattcaatgtatctaaaaaattgttttttgtttataaatgtga 20269575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 6241416 - 6241363
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtgactgaa 90  Q
    |||||||||||||| ||| ||||||||| ||||||| |||||||| ||||||||    
T  6241416 attaattattcaatgtatttaaaaaattattttttatttataaatatgactgaa 6241363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 12399341 - 12399390
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||||||||    
T  12399341 attaattattcaataaatctaaaatattgttttttgattataaatgtgac 12399390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 28499866 - 28499914
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||||    
T  28499866 cattaattattcaatatatctaaaaagttatttttt-cttataaatgtga 28499914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 28499844 - 28499788
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||| ||||| |||||||||  |||||||||||| |||||| ||||||||||||||    
T  28499844 cggatacattagttattcaatgaatctaaaaaattattttttgcttataaatgtgac 28499788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 40773006 - 40772975
Alignment:
Q  55 ctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||||||||||||||||||||    
T  40773006 ctaaaaaattgttttttacttataaatgtgac 40772975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 20269494 - 20269445
Alignment:
Q  40 aattattcaatatatctaaaaaattgttttttacttataaatgtgactgaa 90  Q
    |||||||||||||||||||||| ||||||||| ||||||||| ||| ||||    
T  20269494 aattattcaatatatctaaaaagttgtttttt-cttataaatatgattgaa 20269445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 39063104 - 39063074
Alignment:
Q  56 taaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||||||||||||||||||||||||    
T  39063104 taaaaaattgttttttacttataaatgtgac 39063074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 42698706 - 42698664
Alignment:
Q  44 attcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||    
T  42698706 attcaataaatctaaataattgttttttacttataaatatgac 42698664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 8355613 - 8355556
Alignment:
Q  28 atcggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||| ||||||||||| ||||||| ||||| ||   |||||||||||||||||||    
T  8355613 atcggatacattaattatttaatatatttaaaatatcaatttttacttataaatgtga 8355556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 7065669 - 7065721
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    |||||||||||||||  || |||||| ||| ||||| ||||||||||||||||    
T  7065669 cattaattattcaatgaatttaaaaagttgatttttgcttataaatgtgactg 7065721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 11089343 - 11089295
Alignment:
Q  38 ttaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||| ||||||||||||| ||||||  |||||||| ||||    
T  11089343 ttaattattcaatgtatctaaaaaattattttttgattataaatatgac 11089295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 25840607 - 25840579
Alignment:
Q  57 aaaaaattgttttttacttataaatgtga 85  Q
    |||||||||||||||||||||||||||||    
T  25840607 aaaaaattgttttttacttataaatgtga 25840579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 29961536 - 29961588
Alignment:
Q  23 tataaatcggatgcattaattattcaatatatctaaaaaattgttttttactt 75  Q
    |||||||  ||| |||||||||||||||| | |||||||||| ||||||||||    
T  29961536 tataaatgagatacattaattattcaataaaactaaaaaattattttttactt 29961588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 29212904 - 29212849
Alignment:
Q  31 ggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  29212904 ggatacattgattattcaatatatctaaaaaaatgttttttacttataaatgtgac 29212849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 30122039 - 30122088
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    |||||||||||||||||| |||||||||| |||||| |||||||||||||    
T  30122039 cattaattattcaatatacctaaaaaattattttttgcttataaatgtga 30122088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 19790814 - 19790857
Alignment:
Q  43 tattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||| ||||||||||| |||||||||||||||||||||||    
T  19790814 tattcaatgtatctaaaaaagtgttttttacttataaatgtgac 19790857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 16867677 - 16867624
Alignment:
Q  33 atgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||| ||||||||| || ||||||| ||||||||| ||||||||||||||    
T  16867677 atgcattagttattcaatgtacctaaaaagttgttttttgcttataaatgtgac 16867624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 55121258 - 55121310
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||||||||| |||| ||||||||| || |||||| ||||||||||||||||    
T  55121258 cattaattatttaataaatctaaaaagttattttttgcttataaatgtgactg 55121310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 29212927 - 29212982
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactgaaa 91  Q
    ||||||||||||||| || ||||||||  ||||||| |||||||||||||| ||||    
T  29212927 cattaattattcaatgtacctaaaaaacagttttttgcttataaatgtgaccgaaa 29212982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 18093834 - 18093784
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| ||| |||||| |||||||||  |||||||||||||    
T  18093834 cattaattattcaatgtatttaaaaatttgttttttgtttataaatgtgac 18093784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 18093862 - 18093912
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||||||||| | ||||||| |||||| || ||||||||||||||    
T  18093862 cattaattattcaataaacctaaaaacttgtttattgcttataaatgtgac 18093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 30122006 - 30121952
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtgactgaaa 91  Q
    |||| |||||||||  | ||||||||||| |||||||||||||||||||| ||||    
T  30122006 attagttattcaatgaacctaaaaaattgatttttacttataaatgtgaccgaaa 30121952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 33956370 - 33956426
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactgaaag 92  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||||| |||||    
T  33956370 cattaattattcaatatatctaaaaatttatttttttcttataaatgtgaccgaaag 33956426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 11565057 - 11565007
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| |||||||||  ||||||||| ||||||||||||||    
T  11565057 cattaattattcaatgtatctaaaatgttgttttttgcttataaatgtgac 11565007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 32516218 - 32516268
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||||||||  || ||||||||||| |||||||||||||||||||    
T  32516218 cattaattattcaatgaatttaaaaaattgtgttttacttataaatgtgac 32516268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 31719231 - 31719187
Alignment:
Q  42 ttattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||    
T  31719231 ttattcaatgaatctaaaaagttgttttttacttataaatgtgac 31719187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 27279551 - 27279493
Alignment:
Q  28 atcggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||| ||||| |||||||||  | |||||||||| |||||| ||||||||||||||    
T  27279551 atcggatacattagttattcaatgaacctaaaaaattattttttgcttataaatgtgac 27279493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 41517440 - 41517498
Alignment:
Q  28 atcggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||| ||||||||||||||| ||  |||||| || |||||| ||||||||||||||    
T  41517440 atcggatacattaattattcaatgtacttaaaaagttattttttgcttataaatgtgac 41517498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 9895636 - 9895685
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||| ||| |||||||||| ||||| ||| ||||||||||||||    
T  9895636 attaattatttaatgtatctaaaaagttgttgtttgcttataaatgtgac 9895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 25997402 - 25997451
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||| |||||||| | ||||||||||| |||||| |||||||||||||    
T  25997402 attaatcattcaataaacctaaaaaattggtttttatttataaatgtgac 25997451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 34138783 - 34138828
Alignment:
Q  40 aattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    |||||||||||| | |||||||||||||||||  ||||||||||||    
T  34138783 aattattcaataaacctaaaaaattgttttttgtttataaatgtga 34138828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 9733544 - 9733600
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||| ||||| |||||||||  | |||||||||||||||||  |||||||||||||    
T  9733544 cggatacattagttattcaatgaacctaaaaaattgttttttgtttataaatgtgac 9733600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 32516188 - 32516140
Alignment:
Q  38 ttaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||  ||||||||||||| | ||||||| ||||||||||||||    
T  32516188 ttaattattttatatatctaaaaagtagttttttgcttataaatgtgac 32516140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 32965733 - 32965785
Alignment:
Q  36 cattaattattcaat-atatctaaaaaattgttttttacttataaatgtgact 87  Q
    ||||| ||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  32965733 cattagttattcaatgaaatctaaaaagttggtttttacttataaatgtgact 32965785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 1610020 - 1609971
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  1610020 cattaattattcaatgtatctaaaaagttgttttttgcttataaatgtga 1609971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 24419604 - 24419667
Alignment:
Q  23 tataaatcggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||| || ||| ||||||||||||||| || ||||||| ||||||||| ||||||||||||||    
T  24419604 tataagtcagatacattaattattcaatgtacctaaaaagttgttttttgcttataaatgtgac 24419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 5700115 - 5700169
Alignment:
Q  33 atgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgact 87  Q
    |||||||||||||||||| ||  |||||| ||||||||| |||||||||||||||    
T  5700115 atgcattaattattcaatgtacttaaaaagttgttttttgcttataaatgtgact 5700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 8900850 - 8900800
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  8900850 cattaattattcaatgtacctaaaaagttgtttattacttataaatgtgac 8900800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 35489253 - 35489203
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| |||||||||| |||||||||  |||||||||||||    
T  35489253 cattaattattcaatgtatctaaaaagttgttttttgattataaatgtgac 35489203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 36618892 - 36618942
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||| ||||    
T  36618892 cattaattattcaatgtagttaaaaaattgttttttacttataaatatgac 36618942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 49166692 - 49166742
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| || ||||||| ||||||||| ||||||||||||||    
T  49166692 cattaattattcaatgtaactaaaaagttgttttttgcttataaatgtgac 49166742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 4821260 - 4821305
Alignment:
Q  33 atgcattaattattcaatatatctaaaaaattgttttttacttata 78  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||    
T  4821260 atgcattaattattcaatatatttaaaaaattattttttacatata 4821305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 4833060 - 4833105
Alignment:
Q  33 atgcattaattattcaatatatctaaaaaattgttttttacttata 78  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||    
T  4833060 atgcattaattattcaatatatttaaaaaattattttttacatata 4833105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 8900872 - 8900925
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgt 83  Q
    ||||| |||||||||||||||||| ||||||| |  ||||||||||||||||||    
T  8900872 cggatacattaattattcaatatacctaaaaagtaattttttacttataaatgt 8900925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 1610034 - 1610083
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  1610034 cattaattattcaatgtatcgaaaaagttg-tttttacttataaatgtgac 1610083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 41944826 - 41944776
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||||  ||||| ||||||| ||||||||| ||||||||||||||    
T  41944826 cattaattattggatatacctaaaaagttgttttttgcttataaatgtgac 41944776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 37247658 - 37247706
Alignment:
Q  38 ttaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||||||| ||| ||| |||||| || |||||||||||||||||||||    
T  37247658 ttaattattaaatgtatttaaaaagttattttttacttataaatgtgac 37247706  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 38133475 - 38133523
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||||||| ||| || || |||| ||||||||||||||||||    
T  38133475 attaattattcaataaatcaaacaagttgtattttacttataaatgtga 38133523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 49805169 - 49805133
Alignment:
Q  58 aaaaattgttttttacttataaatgtgactgaaagta 94  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  49805169 aaaaattattttttacttataaatgtgattgaaagta 49805133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 30358659 - 30358718
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgactgaa 90  Q
    ||||| ||||| |||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  30358659 cggatacattatttattcaatatacctaaaaagttgtttttt-cttataaatgtgactgaa 30358718  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 9428116 - 9428069
Alignment:
Q  38 ttaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||||| ||| ||||||||| ||||||| ||||||||||||    
T  9428116 ttaattattcaatgtatttaaaaaattattttttatttataaatgtga 9428069  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 20694510 - 20694553
Alignment:
Q  43 tattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||    
T  20694510 tattcaatgtatctaaaaaattattttttagttataaatgtgac 20694553  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 1784173 - 1784223
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||||  || |||||||||| ||||||||| ||||||||||||||    
T  1784173 cattaattattagatgtatctaaaaagttgttttttgcttataaatgtgac 1784223  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 1157060 - 1157011
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||||||| ||||||||||  ||  ||||||||||||||||||    
T  1157060 cattaattattcaatgtatctaaaaagctgcattttacttataaatgtga 1157011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 2602109 - 2602060
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||| |||| |  ||||||||| ||||||||||||||||||||    
T  2602109 cattaattatttaataaacttaaaaaattattttttacttataaatgtga 2602060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 30358633 - 30358596
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttac 73  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  30358633 cattaattattcaatgtatgtaaaaaattgttttttac 30358596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 30542546 - 30542595
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||||||| ||  ||||||||||||||||| |||||||| ||||    
T  30542546 attaattattcaatgtacttaaaaaattgttttttatttataaatatgac 30542595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 1784151 - 1784095
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||| |||||| |||||||| ||||||||||||  ||||||  |||||||||||||    
T  1784151 cggatacattaaatattcaatgtatctaaaaaatcattttttgtttataaatgtgac 1784095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 6590861 - 6590917
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||| ||||||||||||||| || ||||||| |  |||||| ||||||||||||||    
T  6590861 cggatacattaattattcaatgtacctaaaaagtaattttttgcttataaatgtgac 6590917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 11334299 - 11334251
Alignment:
Q  37 attaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||| ||||||||| ||||||||||  |||||||| ||||||||||||    
T  11334299 attaaatattcaataaatctaaaaaagagttttttatttataaatgtga 11334251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 40737906 - 40737958
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||||||||||||| || |||||||| | |||||| ||||||||| ||||||    
T  40737906 cattaattattcaatgtacctaaaaaactattttttgcttataaatatgactg 40737958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 44329213 - 44329161
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||||||||||||| ||| ||||||||  |||||| ||||||| ||||||||    
T  44329213 cattaattattcaatgtatttaaaaaatcattttttgcttataattgtgactg 44329161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 44803877 - 44803817
Alignment:
Q  28 atcggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||||| |||||  |||| |||  ||||||||| ||||||||||||| ||||||||||||    
T  44803877 atcggatacattagatatttaatgaatctaaaaatttgttttttacttgtaaatgtgactg 44803817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 2635681 - 2635726
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaat 81  Q
    ||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  2635681 cattagttattcaatgtatttaaaaaattgttttttacttataaat 2635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 15996195 - 15996241
Alignment:
Q  31 ggatgcattaattattcaatatatctaaaaaattgttttttacttat 77  Q
    |||| ||||||||||||||| ||||||||||| |||||||| |||||    
T  15996195 ggatacattaattattcaatgtatctaaaaaagtgttttttgcttat 15996241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 47718600 - 47718645
Alignment:
Q  33 atgcattaattattcaatatatctaaaaaattgttttttacttataa 79  Q
    |||||||| |||||||||| | |||||||||||||||||||||||||    
T  47718600 atgcattagttattcaataaa-ctaaaaaattgttttttacttataa 47718645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 3485913 - 3485958
Alignment:
Q  43 tattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||||||  |||||||||||||| |||| ||||||||||||||||    
T  3485913 tattcaatgaatctaaaaaattgtgttttgcttataaatgtgactg 3485958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 12810392 - 12810441
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    |||||||||||||||||| ||||||| |||| |||| |||| ||||||||    
T  12810392 cattaattattcaatatacctaaaaagttgtgttttgcttacaaatgtga 12810441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 13468922 - 13468967
Alignment:
Q  41 attattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    |||||||||| ||  |||||||||||||||| ||||||||||||||    
T  13468922 attattcaatctacataaaaaattgttttttccttataaatgtgac 13468967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 18701088 - 18701047
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgtttttt 71  Q
    |||||||||||||||||||||| | ||||||| |||||||||    
T  18701088 cggatgcattaattattcaataaacctaaaaagttgtttttt 18701047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 40992811 - 40992864
Alignment:
Q  32 gatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtga 85  Q
    ||||||||||||||||||| ||| |||||| ||||||||| ||| ||| |||||    
T  40992811 gatgcattaattattcaatgtatttaaaaagttgttttttgcttgtaattgtga 40992864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 2399778 - 2399834
Alignment:
Q  30 cggatgcattaattattcaatatatctaaaaaattgttttttacttataaatgtgac 86  Q
    ||||| ||||||||||||||||||  |||||| || ||||||| |||||||| ||||    
T  2399778 cggatacattaattattcaatatacttaaaaagttattttttatttataaatatgac 2399834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 16892964 - 16893015
Alignment:
Q  36 cattaattattcaatatatctaaaaaattgttttttacttataaatgtgactg 88  Q
    ||||||||||| || | ||||||||| ||||||||| ||||||||||||||||    
T  16892964 cattaattatttaa-agatctaaaaagttgttttttccttataaatgtgactg 16893015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 21955421 - 21955469
Alignment:
Q  39 taattattcaatatatctaaaaaattg-ttttttacttataaatgtgac 86  Q
    |||||||||||| |||||||||| ||| ||||||| |||||||||||||    
T  21955421 taattattcaatgtatctaaaaagttgtttttttatttataaatgtgac 21955469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 29046363 - 29046395
Alignment:
Q  56 taaaaaattgttttttacttataaatgtgactg 88  Q
    |||||||||||||||| ||||||||||||||||    
T  29046363 taaaaaattgttttttgcttataaatgtgactg 29046395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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