View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667-Insertion-2 (Length: 870)
Name: NF4667-Insertion-2
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 8 - 597
Target Start/End: Original strand, 51359702 - 51360288
Alignment:
| Q |
8 |
gaacatgcaatcaacgaagaaatgtcgataaaaatcacgatcagcggatcgaagtgaggataaaagtgaaccgatagtttcaaagaagataccatgacga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51359702 |
gaacatgcaatcaacgaagaaatgtcgataaaaatcacgatcagcggatcgaagtgaggataaaagtgaaccgatagtttcaaagaagataccatgacga |
51359801 |
T |
|
| Q |
108 |
gagctaaaaagaggatcggcgagaaaagggagcaaaggagcaatgacaggtaaaaccccagtggctttgccgtgatagaagactccgggattatttttgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51359802 |
gagctaaaaagaggatcggcgagaaaagggagcaaaggagcaatgacaggtaaaaccccagtggctttgccgtgatagaagacaccgggattatttttgg |
51359901 |
T |
|
| Q |
208 |
ccgtgtaagagatgagtctgactgcagcaccgacttctttctctaatccggcggaagaggggaggaagtaagtgtggagaagattgaggatgatgcgacg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51359902 |
ccgtgtaagagatgagtctgactgcagcaccgacttctttctctaatccggcggaagaagggaggaagtaagtgtggagaagattgaggatgatgcgacg |
51360001 |
T |
|
| Q |
308 |
gaagcggatattcaaaacttcgtcatcggaatagttgttagaagttggagaagatgatgctgttatgccttctcgaatttgctctactaagttagcgaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51360002 |
gaagcggatattcaaaacttcgtcatcggaatagttgttagaagttggagaagatgatgctgttatgccttctcgaatttgctctactaagttagcgaag |
51360101 |
T |
|
| Q |
408 |
gttgcccttgtcatcttcttctctgtgaacattaactgctcgcttttcttctcatttcatcttccctctcaaatgtactacttcaattcaatttcatttc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
51360102 |
gttgcccttgtcatcttcttctctgtgaacattaactgctcgcttttcttctcatttcatcttccctcccaaatgtactccttcaattcaatttcatttc |
51360201 |
T |
|
| Q |
508 |
ttattttactagtattgtattttccct--tgtgtcgttgttttcttatggccattttttacccattttgaccaagaggctggacatgggcct |
597 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51360202 |
ttattttacta-----gtattttcccttgtgtgtcgttgttttcttatgaccatttttgacccattttgaccaagaggctggacatgggcct |
51360288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 664 - 713
Target Start/End: Original strand, 51360341 - 51360389
Alignment:
| Q |
664 |
tacatacatacattccgaaagattttgtttggtatagcttccttgaattt |
713 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51360341 |
tacatacatacattc-gaaagattttgtttggtatagcttccttgaattt |
51360389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 791 - 867
Target Start/End: Original strand, 51360496 - 51360572
Alignment:
| Q |
791 |
aagtaaataaa-tcaatatataataatcattccgaaagagtttgagttcgattcttgtatagaacagttatgggttaa |
867 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||| | |||||||||||||| |||||| |
|
|
| T |
51360496 |
aagtaaataaaatcaatatataataatcattcggaa-gagtttgagtttgattcctatatagaacagttattggttaa |
51360572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 676
Target Start/End: Original strand, 51360287 - 51360341
Alignment:
| Q |
620 |
cttgcaacgagat-gtcacttgggattttaacaagacccccttactacatacatacat |
676 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51360287 |
cttggaacgagattgtcacttgggattttaacaaga---ccttactacatacatacat |
51360341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University