View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667-Insertion-20 (Length: 199)
Name: NF4667-Insertion-20
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-20 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 8365994 - 8365803
Alignment:
| Q |
8 |
gaaaggagtagcgaggtttggaaagtttaaaatgtaaattgcaaacatgacatttttgttagtagatttattttatagactaatttgaccaacgaaaatc |
107 |
Q |
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| T |
8365994 |
gaaaggagtagcgaggtttggaaagtttaaaatgtaaattgcaaacatgacatttttgttagtagatttattttatagactaatttgaccaacgaaaatc |
8365895 |
T |
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| Q |
108 |
gcatttgatgactatactgactaaaaatatattcgaggaccaaaatgactaatattagagaaatttgtggatatttttgcagtttcgatata |
199 |
Q |
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| T |
8365894 |
gcatttgatgactatactgactaaaaatatattcgaggaccaaaatgactaatattagagaaatttgtggatatttttgtagttacgatata |
8365803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 8357589 - 8357443
Alignment:
| Q |
8 |
gaaaggagtagcgaggtttggaaagtttaaaatgtaaattgcaaacatgac-atttttgttagtagatttattttatagactaatttgaccaacgaaaat |
106 |
Q |
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| T |
8357589 |
gaaaggagtagcgaggtttggagagttttaaatgtaaattgcaaacatgactttttttgttagtagatttattttatggactaatttgattaactaaaat |
8357490 |
T |
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| Q |
107 |
cgcatttgatgacta-tactgactaaaaatatattcgaggaccaaaa |
152 |
Q |
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| T |
8357489 |
cacatttgacgactattactaattaaaaacatatttgaggaccaaaa |
8357443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 8352424 - 8352305
Alignment:
| Q |
20 |
gaggtttggaaagtttaaaatgtaaattgcaaacatgacatttttgttagtagatttattttatagactaatttgaccaacgaaaatcgcatttgatgac |
119 |
Q |
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| T |
8352424 |
gaggtttggagcgttgataatgcaaattgttaacatgacttttttgttagtaaatttattttatggaataatttgaccaaagaaaatcacatttgatgac |
8352325 |
T |
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| Q |
120 |
tatactgactaaaaatatat |
139 |
Q |
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| T |
8352324 |
tatacaaactaaaaatatat |
8352305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 8357434 - 8357377
Alignment:
| Q |
142 |
gaggaccaaaatgactaatattagagaaatttgtggatatttttgcagtttcgatata |
199 |
Q |
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| T |
8357434 |
gaggaccaaaatgactaatattagagagatttgtggatatttttgcagtttcaatata |
8357377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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