View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667-Insertion-3 (Length: 742)
Name: NF4667-Insertion-3
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 596
Target Start/End: Complemental strand, 37468577 - 37467988
Alignment:
| Q |
7 |
atctttggcctcgaaatcccccaataactcgacgcaaccacgttattcttcgttccggaactctcctccttcttcttctcgttcttctcggtcgatttcg |
106 |
Q |
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| T |
37468577 |
atctttggcctcgaaatcccccaataactcgacgcaaccacgttattcttcgttccggaactctcctccttcttcttctcgttcttctcggtcgatttcg |
37468478 |
T |
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| Q |
107 |
cctccgtctcttccgccgatggcttcgacggtgccgcttgcgaagacatcatcctcttccagtaaaataaccctccgtttccgccataggcgtagagatg |
206 |
Q |
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| T |
37468477 |
cctccgtctcttccgccgatggcttcgacggtgccgcttgcgaagacatcatcctcttccagtaaaataaacctccgtttccgccatcggcgtagagatg |
37468378 |
T |
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| Q |
207 |
cttctgtccaatttctgccgccgcgaatgacctcacaaccgccgaactttgacggttagaattccggccaccgatcaaagctcggcgagccacgtaacaa |
306 |
Q |
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| T |
37468377 |
cttctgtccaatttctgccgccgcgaatgacctcacaaccgccgaactttgacggttagaattccggccaccgatcaaagctcggcgagccacgtaacac |
37468278 |
T |
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| Q |
307 |
aatgctaaatgcttcatctttcgagagcgaaggaatcgcgttttgataagtttccaagaaatctggaattacagttactgaagaagaagcaacggtgttt |
406 |
Q |
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| T |
37468277 |
aatgctgaatgcttcatctttcgagagcgaaggaatcgcgttttgataagtttccaagaaatctggaattacagttaccgaagaagaagcaacggtgttt |
37468178 |
T |
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| Q |
407 |
atatatggggttccttttcatgcatttctcgtgatgattggtaagaaacgttttcagccgttgattgagtgggttagtaatgtgatcgacggttgtgatg |
506 |
Q |
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| T |
37468177 |
atatatggggttccttttcatgcatttctcgtgatgattggtaagaaacgttttcagccgttgattgagtgggttagtaatgtgatcgacggttgtgatg |
37468078 |
T |
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| Q |
507 |
acgggaatgctgtggagggagtttgacgtgcaataaggcgcgtagtttttggataagaatcgcatctactggagtaaggcggtgtaggaa |
596 |
Q |
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| T |
37468077 |
acgggaaagctgtggagggagtttgacgtgcaataaggcgcgtagtttttggataagaatcgcatctactggagtaaggcggtgtaggaa |
37467988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 708 - 738
Target Start/End: Complemental strand, 37464209 - 37464179
Alignment:
| Q |
708 |
ccctccaaaaccatcttgatcccctcctttt |
738 |
Q |
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| T |
37464209 |
ccctccaaaaccatcttgatcccctcctttt |
37464179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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