View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667-Insertion-4 (Length: 730)
Name: NF4667-Insertion-4
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 653; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 7 - 719
Target Start/End: Complemental strand, 8719290 - 8718583
Alignment:
| Q |
7 |
aatctgaaggtgaaacatctcttatcatataatgctctttacctaaatttacgtttagaagtacacatatcttgtgattatttgactgaatctatagtta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8719290 |
aatctgaaggtgaaacatctcttatcatataatgctctttacctaaatttacgtttagaagtacacatatcttgtgattatttgactgaatctatagtta |
8719191 |
T |
|
| Q |
107 |
ataactttaatcactatattgtaaaatcttgcagtcatgcacgaaagttgcattagactttgtgtcaccagaaaatgtggatatatgcatgcttttaact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8719190 |
ataactttaatcactatattgtaaaatcttgcagtcatgcacgaaagttgcagtagactttgtgtcaccagaaaatgtggatatatgcatgcttttaact |
8719091 |
T |
|
| Q |
207 |
gaagagtttcgtcgccttcctaagaatcacagggcaagagaggacaaacttgaggtgattttaatattccctttttgtcttcctttcttttgatgtgaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8719090 |
gaagagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttgaggtgattttaatattcc-tttttgtcttcctttcttttgatgtgaat |
8718992 |
T |
|
| Q |
307 |
ttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgtttatttacgaaacaggtaaaaaagatgataatccatgc |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8718991 |
ttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgtttatttatgaaacaggtaaaaaagatgataatccatgc |
8718892 |
T |
|
| Q |
407 |
tgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8718891 |
tgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagc |
8718792 |
T |
|
| Q |
507 |
tgctgctgtttttatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttgg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8718791 |
tgctgctgtttttatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctctt-g |
8718693 |
T |
|
| Q |
607 |
gtatttagtcaaatatttgtgtattttcttttttacacacattatttatttcatgtcacaaaaccctcttaatgatgcttagatgggaccatgactccta |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8718692 |
gtatttagtcaaatatttgtgtattttcttttttacacacattatttatttcatgtcccaaaa-cctcttaatgatgcttagat-ggaccatgactccta |
8718595 |
T |
|
| Q |
707 |
tggaaatacaaat |
719 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
8718594 |
t-gaaatacaaat |
8718583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 7 - 723
Target Start/End: Complemental strand, 8672993 - 8672267
Alignment:
| Q |
7 |
aatctgaaggtgaaacatctcttatcatataatgctctttacctaaatttacgtttagaagtacac--atatcttgtgattatttgactgaatctatagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
8672993 |
aatctgaaggtgaaacatctcttatcatataatcctctttacctaaatttaagtttaaaagtacatgtatatcttttgattatttgactgaatctatagt |
8672894 |
T |
|
| Q |
105 |
taataactttaatcactatattgtaaaatcttgcagtcatgcacgaaagttgcattagactttgtgtcaccagaaaatgtggatatatgcatgcttttaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8672893 |
taataactttaatcactatattgtaaaatcttgcagtcatgcacaaaagttgcagtagactttgtgtcaccagaaaatgtggatatatgcatgcttttaa |
8672794 |
T |
|
| Q |
205 |
ctgaagagtttcgtcgccttcctaagaatcacagggcaagagaggacaaacttgaggtgattttaatattccctttttgtcttcctttcttttgatgtga |
304 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8672793 |
ctg--gagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttgaggtgattttaatatt-cctttttgtcttcctttcttttgatgtga |
8672697 |
T |
|
| Q |
305 |
atttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgttta------------tttacgaaacaggt-aaaaaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| | ||| || | ||||||| | |||||| |
|
|
| T |
8672696 |
atttcaaactaagaaagttgaaaaggagaacataattgtagataactttgctttatttttggggttaattgcgatatttttcatgaaacagataaaaaaa |
8672597 |
T |
|
| Q |
392 |
gatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatt |
491 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||| |||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
8672596 |
gatgataatccatgttgttgatctagttgttcaagatttggaagctttcattaaatgctcatcattagactaaatgttgcttcaatcaagctgattcatt |
8672497 |
T |
|
| Q |
492 |
tttccatgacatagctgctgctgtttt--tatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattatta |
589 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8672496 |
tttccatgacatagctgctgctgtttttatatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattatta |
8672397 |
T |
|
| Q |
590 |
tacatttattctcttgggtatttagtcaaatatttgtgtattttcttttttacacacattatttatttcatgtcacaaaaccctcttaatgatgcttaga |
689 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
8672396 |
tacatttattctctt-ggtatttagtcaaatatttgtgtattttcttttttacacacattatttatttcatgtcacaaaa-cctcttaatggttcttaga |
8672299 |
T |
|
| Q |
690 |
tgggaccatgactcctatggaaatacaaattgcc |
723 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||| |
|
|
| T |
8672298 |
t-ggaccatgactcctat-gaaatacaaattgcc |
8672267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 8591453 - 8591082
Alignment:
| Q |
7 |
aatctgaaggtgaaacatctcttatcatataatgctctttacctaaatttacgtttagaa-gtacacatatcttgtgattatttgactgaatctatagtt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || |||||||| | ||| || ||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
8591453 |
aatctgaaggtgaaacatctcttatcatataattctcttgacttaaatttaagcttaaaaagtacaagtaacttgtggttatttgactgaatctatagtt |
8591354 |
T |
|
| Q |
106 |
aataactttaatcactatattgtaaaatcttgcagtcatgcacgaaagttgcattagactttgtgtcaccagaaaatgtggatatatgcatgcttttaac |
205 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8591353 |
agtaactctaatcactatattgtaaaatcttgcagtcatgcacgaaaattgcagcagactttgtgtcaccagaaaatgtggatatctgcatgcttttaac |
8591254 |
T |
|
| Q |
206 |
tgaagagtttcgtcgccttcctaagaatcacagggcaagagaggacaaacttgaggtgattttaatattccctttttgtcttcctttcttttgatgtgaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
8591253 |
tgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaataat-cctttttgccttcctttcttttgatgtgaa |
8591155 |
T |
|
| Q |
306 |
tttcaaactaagaaagttgaaaaggagaacataattgtagacaac---tttgcttaatatttgtgtttattta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||| |
|
|
| T |
8591154 |
tttcaaactaagaaagttgaaaaggagaacataattgtggacaactaatttgctttgtttttgtgtttattta |
8591082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 379 - 448
Target Start/End: Complemental strand, 8591052 - 8590983
Alignment:
| Q |
379 |
aacaggtaaaaaagatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatg |
448 |
Q |
| |
|
||||| ||||||| ||||||||| |||||| ||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
8591052 |
aacagttaaaaaatatgataatctatgctgctgaccaagttgttgaagaattggaagctttcattggatg |
8590983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 561
Target Start/End: Complemental strand, 8590958 - 8590925
Alignment:
| Q |
528 |
aacatgatagttctaatttatttggagtgaaaaa |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8590958 |
aacatgatagttctaatttatttggagtgaaaaa |
8590925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 377 - 488
Target Start/End: Original strand, 23439993 - 23440104
Alignment:
| Q |
377 |
gaaacaggtaaaaaagatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaa |
476 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||| ||||||| || |
|
|
| T |
23439993 |
gaaacaggtaaaaaagatgataatccatgttgttgaccaagttgttcaagattttgaagctttcattagatgctcatcactggactgaaagttgctttaa |
23440092 |
T |
|
| Q |
477 |
tcaagctgattc |
488 |
Q |
| |
|
||||| |||||| |
|
|
| T |
23440093 |
tcaagttgattc |
23440104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 5116184 - 5116075
Alignment:
| Q |
74 |
tatcttgtgattatttgactgaatctatagttaataactttaatcactatattgtaaaatcttgcagtcatgcacgaaagttgcattagac-tttgtgtc |
172 |
Q |
| |
|
||||| |||||||||||| || |||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
5116184 |
tatctagtgattatttgattgtatctatttttaataactctaaatactatattgtaaaatcttgcagtcatgcacaaaagttgctgcagacttttgtgtc |
5116085 |
T |
|
| Q |
173 |
accagaaaat |
182 |
Q |
| |
|
|| ||||||| |
|
|
| T |
5116084 |
acaagaaaat |
5116075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University