View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4667-Insertion-5 (Length: 685)
Name: NF4667-Insertion-5
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 1961918 - 1962297
Alignment:
| Q |
6 |
cactctcaatctataaggcgagccaaaattgataagttgtctctatattgtcaaatctaatacaaacccttggcttccaagaacatctgaaaatgtcatg |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1961918 |
cactctcaatctataaggcgagccaaaattgataagttgtctctatattgtcaaatctaatacaaacccttggcttccaagaacatttgaaaatgtcatg |
1962017 |
T |
|
| Q |
106 |
tttgatcaaactccccaaataaagtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatg |
205 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962018 |
tttgatcaaactcccaaaataaagtaacctggcaaatgaatagtagaattaaaaattatatttatccaataattgtattcctaatataaaaatgataatg |
1962117 |
T |
|
| Q |
206 |
atcactaaataaaagtc--nnnnnnnnnccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgccgtttggtcaatg |
303 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1962118 |
atcactaaataaaagtctttttttttttccataccaataaataaccagaatgtggcaagtaataaaattcagaagtcaaggctgcgctgtttggtcaatg |
1962217 |
T |
|
| Q |
304 |
gttggggtgaaagtctgacctgtttgtggtttttacccaattctgtgtgctggacacaaagatacacttggtgcctgttt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962218 |
gttggggtgaaagtctgacctgtttgtggtttttacccaattctgtgtgctggacacaaagatacacttggtgcctgttt |
1962297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 386 - 685
Target Start/End: Original strand, 1962277 - 1962571
Alignment:
| Q |
386 |
agatacacttggtgcctgttttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaa |
485 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1962277 |
agatacacttggtgcctgttttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaa |
1962376 |
T |
|
| Q |
486 |
catgtataggtggttgagttgagttctgtttttggttttcctttcacaagcataaaaaagtattaacttataagctgtaaactaagaacaaattttcatg |
585 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1962377 |
catgtataggt-----agttgagttctgtttttggttttcctttcacaagcataaaaaaatattaacttataagctgtaaactaagaacaaattttcatg |
1962471 |
T |
|
| Q |
586 |
gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatact |
685 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962472 |
gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatact |
1962571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 505 - 685
Target Start/End: Complemental strand, 2019423 - 2019241
Alignment:
| Q |
505 |
tgagttctgtttttggttttcctttcacaagcataaaa---aagtattaacttataagctgtaaactaagaacaaattttcatggagaaaacagttcata |
601 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
2019423 |
tgagttctgtttt-ggttttcctttcacaagcataaaattaaagaattcacttataagctgtaaactaataactaattttcatggagaaaacagttcata |
2019325 |
T |
|
| Q |
602 |
ttgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatact |
685 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2019324 |
ttgcagttgttccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcatccatact |
2019241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 405 - 681
Target Start/End: Complemental strand, 2016143 - 2015862
Alignment:
| Q |
405 |
tttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaacatgtataggtggttgagt |
504 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| |||||| |||| || |
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| T |
2016143 |
tttgttcttcccatcatgtgtggctcttattcat-cgttttgaaacttgtcaaacacatacataatgtcaattttgcagagcatgtagaggt-----agg |
2016050 |
T |
|
| Q |
505 |
tgagttctgtttttggttttcctttcacaagcataaaaaagtattaac-----------ttataagctgtaaactaagaacaaattttcatggagaaaac |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
2016049 |
tgagttctgtttttggttttcctttcacaagcataaaaaaaaaaaaaaaaaaaaaaaagttataagcggtaaactaagaacaaatttttatggagaaaac |
2015950 |
T |
|
| Q |
594 |
agttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatcca |
681 |
Q |
| |
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| ||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||| ||||||||||||||||||| |
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| T |
2015949 |
aattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatcca |
2015862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 555 - 685
Target Start/End: Complemental strand, 2013522 - 2013391
Alignment:
| Q |
555 |
ataagctgtaaactaag-aacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaatt |
653 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
2013522 |
ataagctgtaaactaaacaacaaatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaatt |
2013423 |
T |
|
| Q |
654 |
ctccaaactacttgttcagcttcatccatact |
685 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |
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|
| T |
2013422 |
ttcgaagctacttgttcagcttcatccatact |
2013391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 574 - 681
Target Start/End: Complemental strand, 2008955 - 2008848
Alignment:
| Q |
574 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
673 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||||||| ||||||||||| |
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|
| T |
2008955 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcagc |
2008856 |
T |
|
| Q |
674 |
ttcatcca |
681 |
Q |
| |
|
|||||||| |
|
|
| T |
2008855 |
ttcatcca |
2008848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 574 - 681
Target Start/End: Original strand, 1968060 - 1968167
Alignment:
| Q |
574 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
673 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| ||||||||||||||||| ||||||||| | |
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|
| T |
1968060 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaagagacttgttcaac |
1968159 |
T |
|
| Q |
674 |
ttcatcca |
681 |
Q |
| |
|
|||||||| |
|
|
| T |
1968160 |
ttcatcca |
1968167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 573 - 681
Target Start/End: Complemental strand, 2005576 - 2005468
Alignment:
| Q |
573 |
acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag |
672 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||| ||||||||| |
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|
| T |
2005576 |
acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaa |
2005477 |
T |
|
| Q |
673 |
cttcatcca |
681 |
Q |
| |
|
||||||||| |
|
|
| T |
2005476 |
cttcatcca |
2005468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 680
Target Start/End: Complemental strand, 2012565 - 2012464
Alignment:
| Q |
579 |
tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat |
678 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||| ||||| || ||||| | ||||||||| |
|
|
| T |
2012565 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttacttatccagcttcat |
2012466 |
T |
|
| Q |
679 |
cc |
680 |
Q |
| |
|
|| |
|
|
| T |
2012465 |
cc |
2012464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 655
Target Start/End: Original strand, 1964500 - 1964581
Alignment:
| Q |
576 |
aattttcatggagaaaacagttcatattgcagttgttcctggtgttgg--atatagccacttattcccaattcttcaattct |
655 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||| |||||||| ||||| ||| ||| || | ||||||||||||| |
|
|
| T |
1964500 |
aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct |
1964581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 573 - 681
Target Start/End: Original strand, 5901638 - 5901746
Alignment:
| Q |
573 |
acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag |
672 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||| |||| |||| | | |||||||| ||| || | |||||| |||||||||| |||||||||||| |
|
|
| T |
5901638 |
acaaattttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcag |
5901737 |
T |
|
| Q |
673 |
cttcatcca |
681 |
Q |
| |
|
|| |||||| |
|
|
| T |
5901738 |
ctccatcca |
5901746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 574 - 681
Target Start/End: Original strand, 18189425 - 18189532
Alignment:
| Q |
574 |
caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc |
673 |
Q |
| |
|
||||||| |||||| |||||| |||| |||||||||||||| |||||||| ||| | |||||| |||| |||||||||||||| || ||||| | || | |
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| T |
18189425 |
caaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatc |
18189524 |
T |
|
| Q |
674 |
ttcatcca |
681 |
Q |
| |
|
|||||||| |
|
|
| T |
18189525 |
ttcatcca |
18189532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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