View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667-Insertion-6 (Length: 630)
Name: NF4667-Insertion-6
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 53089480 - 53089765
Alignment:
| Q |
7 |
agagatgacatacaatgtgccatcaacatgctttcttctttagctttctctagattttctcgtgtttcctccagctcagctgtaacgttttcaacccttg |
106 |
Q |
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| T |
53089480 |
agagatgacatacaatgtgccatcaacatgctttcttctttagctttctctagattttctcgtgtctcctccagctcagctgtaacgttttcaacccttg |
53089579 |
T |
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| Q |
107 |
aagactgatcaaccccattttcatttgctccattgtgaatctat----------------agacgaacaacgataaactattaatcatgtgtggaagtgt |
190 |
Q |
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| T |
53089580 |
aagactgatcaaccccattttcatttgctccattgtgaatctatatattagaagacatggagacgaacaacaataaattattaatcatgtgtggaagtgt |
53089679 |
T |
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| Q |
191 |
aaattttaaaccataaacaagtgatcatgaggaaattagactgtcagataatccttattaatctctaagatgcccaaaatgttttt |
276 |
Q |
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| T |
53089680 |
aaattttaaaccataaacaagtgatcatgaggaaattagaccgtcagataatcctaattaatctctaagatgcccaaaatgatttt |
53089765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 430 - 630
Target Start/End: Original strand, 53090045 - 53090254
Alignment:
| Q |
430 |
tacattcatgaatcattcgctatatattttattgggagatat--agcaacacccatttgagtatatctatcactcatgtcgcatcatattgtcaaac--- |
524 |
Q |
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| T |
53090045 |
tacattcgtgaatcattcgctatatattttattgggagatatatagcaacacccatttgagtatatctatcactcatgtcgcatcatattgttaaactga |
53090144 |
T |
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| Q |
525 |
----tgagaaatgttatcaacacacattctaacatacattttccaacaatgtgtgttgctagcatttctcttgtcacgctatattgaaaacacaaatgaa |
620 |
Q |
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| T |
53090145 |
gaaatgagaaatgttatcaacacacgttctaacatatacttttcaataatgtgtgttgctagcatttctcttgtcacactatattgaaagcacaaatgaa |
53090244 |
T |
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| Q |
621 |
tttacttata |
630 |
Q |
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| T |
53090245 |
tttacttata |
53090254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 269 - 425
Target Start/End: Original strand, 53089819 - 53089964
Alignment:
| Q |
269 |
atgtttttactttttacatacctacgggtcaataattaatttttctgaccaaatgattaataatttgagtatatctatcattcatgtcgcaccatagaat |
368 |
Q |
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| T |
53089819 |
atgtttttactttttacatacctacgggtcaataattaatttttctgaccaaatgattaataatttgagtatatctatcattc-----------gagaat |
53089907 |
T |
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| Q |
369 |
ttgagtaggaaaatgctttatatagcgagaagtgggttcacgaagtttcacaatacg |
425 |
Q |
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| T |
53089908 |
ttgagtaggaaaatgctttatatagcgagaagtgggttcacgaagtttcacaatacg |
53089964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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