View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4667-Insertion-7 (Length: 544)
Name: NF4667-Insertion-7
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4667-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 19501684 - 19501265
Alignment:
| Q |
8 |
aatactgtgttggattatcgacagagacggtaatgttgaactcggctgtgagttgggtgttgctaatggttagtgagttgagtgaaccctctgagccgac |
107 |
Q |
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| T |
19501684 |
aatactgtgtgggattatcgacagagacggtaatgttgaactcggctgtgagttgggtgttgctaatggttagtgagttgagtgaaccctctgagccgac |
19501585 |
T |
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| Q |
108 |
tttgaatatagggaggttgcatgtgtggttgcacgtgtgcaagcctcgagatatatatgcgtcgcctaaataatcgaagaatccaatcgcnnnnnnnntg |
207 |
Q |
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| T |
19501584 |
tttgaagttagggaggttgcatgtgtggttgcatgtgtacatgccgcgagatatataagcgtcgcctaaataattgaagaattcaatcgcaagaataatg |
19501485 |
T |
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| Q |
208 |
agacagagaatggacacaaaggtacagaataaacagcagaaagcattggaagacgaaacctcttcttcggtgtctttgtaagtagaagttggaatcgcag |
307 |
Q |
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| T |
19501484 |
agactgagaatggacataaaggtacagaagaaacggcagaaagcattggaagacgaaacattttcttgggtgtctttgtgagtagaagttggaatcgcag |
19501385 |
T |
|
| Q |
308 |
ccattgcaagggtttggtttgtttgtgacgagaagttatttccaatgctagggttgtgtttgtcaagttcttaacaaagagagtttaaatagagtacgag |
407 |
Q |
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| T |
19501384 |
ccattgctagggtttggtttgtttgtgacgagaagttatttccaatgctagggttgtgtttgtcaagttcttaacaaagagagtttaaatagagcatgat |
19501285 |
T |
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| Q |
408 |
gtagca-ggtttctttagta |
426 |
Q |
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| T |
19501284 |
gtaggagggtttctttagta |
19501265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 19517661 - 19517740
Alignment:
| Q |
8 |
aatactgtgttggattatcgacagagacggtaatgttgaactcggctgtgagttgggtgttgctaatggttagtgagttg |
87 |
Q |
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| T |
19517661 |
aatactctgtggggttatcggcagagaccgtaatgttgaactcggctgtgagttgggtgttgctaatggttagtgagttg |
19517740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 19493625 - 19493566
Alignment:
| Q |
39 |
aatgttgaactcggctgtgagttgggtgttgctaatggttagtgagttgagtgaaccctc |
98 |
Q |
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| T |
19493625 |
aatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctc |
19493566 |
T |
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