View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4667-Insertion-8 (Length: 540)

Name: NF4667-Insertion-8
Description: NF4667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4667-Insertion-8
NF4667-Insertion-8
[»] chr1 (8 HSPs)
chr1 (38-540)||(46738009-46738507)
chr1 (146-227)||(8028679-8028760)
chr1 (146-205)||(35632987-35633045)
chr1 (145-219)||(21966234-21966307)
chr1 (149-271)||(13288552-13288676)
chr1 (30-67)||(49948025-49948062)
chr1 (146-222)||(4968699-4968774)
chr1 (147-207)||(10448145-10448205)
[»] chr8 (12 HSPs)
chr8 (146-227)||(15920051-15920130)
chr8 (146-227)||(1657897-1657978)
chr8 (150-227)||(36801864-36801941)
chr8 (146-227)||(415166-415247)
chr8 (146-227)||(14031754-14031835)
chr8 (146-227)||(37402198-37402279)
chr8 (146-223)||(4205157-4205233)
chr8 (146-222)||(6335849-6335925)
chr8 (191-243)||(12826401-12826453)
chr8 (146-207)||(4438542-4438602)
chr8 (146-223)||(13206126-13206202)
chr8 (175-227)||(35173379-35173431)
[»] scaffold0035 (1 HSPs)
scaffold0035 (146-227)||(81814-81895)
[»] chr7 (12 HSPs)
chr7 (146-227)||(5096508-5096589)
chr7 (17-66)||(21018484-21018533)
chr7 (150-242)||(1292086-1292179)
chr7 (174-227)||(24389841-24389894)
chr7 (146-227)||(31309734-31309815)
chr7 (146-227)||(40358463-40358543)
chr7 (149-221)||(32358849-32358920)
chr7 (146-224)||(13703299-13703376)
chr7 (146-175)||(13640665-13640694)
chr7 (146-175)||(13703046-13703075)
chr7 (146-227)||(39753588-39753669)
chr7 (146-186)||(30248163-30248203)
[»] chr5 (9 HSPs)
chr5 (146-227)||(41879793-41879874)
chr5 (146-227)||(27263826-27263907)
chr5 (146-227)||(28394654-28394735)
chr5 (146-227)||(31172286-31172367)
chr5 (150-224)||(28040229-28040304)
chr5 (146-209)||(42522718-42522780)
chr5 (146-223)||(27598334-27598410)
chr5 (174-227)||(31202023-31202076)
chr5 (150-222)||(39850394-39850465)
[»] chr4 (13 HSPs)
chr4 (146-227)||(23315894-23315975)
chr4 (150-223)||(24670080-24670152)
chr4 (146-227)||(44689767-44689848)
chr4 (146-222)||(22160350-22160426)
chr4 (150-243)||(55109844-55109938)
chr4 (152-227)||(6028628-6028702)
chr4 (146-248)||(645989-646094)
chr4 (149-227)||(28715410-28715487)
chr4 (146-234)||(33389900-33389991)
chr4 (146-227)||(38490901-38490981)
chr4 (151-227)||(4815875-4815951)
chr4 (191-227)||(10981668-10981704)
chr4 (145-201)||(24535278-24535334)
[»] chr3 (9 HSPs)
chr3 (146-227)||(44177008-44177089)
chr3 (146-227)||(3806655-3806736)
chr3 (146-227)||(44183689-44183770)
chr3 (146-227)||(37681336-37681416)
chr3 (146-227)||(37980284-37980365)
chr3 (148-227)||(19578670-19578748)
chr3 (146-223)||(5846243-5846319)
chr3 (146-227)||(17583198-17583278)
chr3 (146-226)||(54114330-54114407)
[»] chr2 (5 HSPs)
chr2 (146-227)||(23914565-23914645)
chr2 (146-227)||(40324369-40324450)
chr2 (146-227)||(2383078-2383159)
chr2 (146-227)||(14690104-14690183)
chr2 (146-214)||(30675540-30675607)
[»] scaffold0003 (1 HSPs)
scaffold0003 (145-222)||(226394-226469)
[»] scaffold1017 (1 HSPs)
scaffold1017 (146-227)||(2043-2123)
[»] chr6 (4 HSPs)
chr6 (146-227)||(13846529-13846610)
chr6 (146-208)||(8866868-8866929)
chr6 (174-228)||(11573365-11573419)
chr6 (153-227)||(33803894-33803968)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 38 - 540
Target Start/End: Original strand, 46738009 - 46738507
Alignment:
Q  38 aattttaatttaaataaatttggaaaactgnnnnnnnnnngtaacctggtagaatacaagtcgtgtgcacttgatgacaactgttgtcgtgctatcgagt 137  Q
    ||||| ||||||||||||||||||||||||          ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46738009 aatttaaatttaaataaatttggaaaactgaaaaaa----gtaacttggtggaatacaagtcgtgtgcacttgatgacaactgttgtcgtgctatcgagt 46738104  T
Q  138 attattggtaacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggtaattagaagtg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46738105 attattggtaacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggtaattagaagtg 46738204  T
Q  238 aaaaagacaaccaaaaactatgtattctttttatttcgtgtatagatataaatatgcacaatgatttatag-nnnnnnnnnnaagagatttatagttaga 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||           ||||||||||||||||||    
T  46738205 aaaaagacaaccaaaaactatgtattctttttatttcgtgtatagatataaatatacacaatgatttatagttttttttttaaagagatttatagttaga 46738304  T
Q  337 catattgttcgtgtaacacttttatataccgtcactgcatagaaattgaaagagttctagcaactcatatgcagatctcacataaattctcagagattca 436  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46738305 catattgttcgtgtaacacttttatataccatcactgcatagaaattgaaagagttctagcaactcatatgcagatctcacataaattctcagagattca 46738404  T
Q  437 tgtatattttaaccaattaaagagtgtataatcgtttatagaattaacataaaactaatgataaatgaaccccgtgtgagcgtcacatcagccgattgag 536  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  46738405 cgtagattttaaccaattaaagagtgtataatcgtttatagaattaacataaaactaatgataaatgaa-ctcgtgtgagcgtcacatcagccgattgag 46738503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 8028679 - 8028760
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||| ||| ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  8028679 taacaaatataatataaattcttttttttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 8028760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 35633045 - 35632987
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattctta 205  Q
    ||||||||||||||||||||||||| | ||||||||||||  || || ||||||||||||    
T  35633045 taacaaatataatataaattcttatat-tttttaataacaccaacaaaataacattctta 35632987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 21966307 - 21966234
Alignment:
Q  145 gtaacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtt 219  Q
    |||||||||||||||||||||||||| | |||| ||| |||  || ||||| | |||||||||| ||||||||||    
T  21966307 gtaacaaatataatataaattcttatct-ttttgaatgacaccaaaaatatgatattcttataacgaaatttgtt 21966234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 13288676 - 13288552
Alignment:
Q  149 caaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta--attagaagtgaaaaagaca 246  Q
    |||||||||||||||||||||||| || | ||| |||  |||||||||||||   ||||   ||||||||||||| |||  ||| || ||||||||||      
T  13288676 caaatataatataaattcttattttttctaaatgacaccaagaatataacatcaatatagacaaatttgtttaagagtatgattggacgtgaaaaagatg 13288577  T
Q  247 accaaaaactatgtattctttttat 271  Q
      | ||||||||||||||| |||||    
T  13288576 gtccaaaactatgtattctctttat 13288552  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 49948025 - 49948062
Alignment:
Q  30 tgaaattaaattttaatttaaataaatttggaaaactg 67  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  49948025 tgaaattaaattttaattaaaataaatttgtaaaactg 49948062  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 4968699 - 4968774
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaa 222  Q
    |||||||||||| | |||||||||| | | || |||||||  || ||||||||||| ||||||| ||||||||||||    
T  4968699 taacaaatataacaaaaattcttatctatctt-aataacaccaacaatataacattattataagaaaatttgtttaa 4968774  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 10448145 - 10448205
Alignment:
Q  147 aacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttata 207  Q
    |||||||||| ||||||||||||| | ||||||||||||  || || ||| ||||||||||    
T  10448145 aacaaatatagtataaattcttatctttttttaataacatcaacaaaatatcattcttata 10448205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 15920130 - 15920051
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| |  |||||||||||  || ||||||||||| ||||||| |||||||||||||||||    
T  15920130 taacaaatataataaaaattcttatct--ttttaataacaccaacaatataacattattataagaaaatttgtttaagggta 15920051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 1657978 - 1657897
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  1657978 taacaaatataatataaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 1657897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 36801941 - 36801864
Alignment:
Q  150 aaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||| ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  36801941 aaatataatataaattcttatttttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 36801864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 415247 - 415166
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  415247 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 415166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 14031754 - 14031835
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||| ||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  14031754 taacaaatataatatgaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 14031835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 37402198 - 37402279
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  37402198 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 37402279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 4205157 - 4205233
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaag 223  Q
    ||||||||||||||||||||| ||| | ||||||||| ||  || |||||||||||  |||||| |||||||||||||    
T  4205157 taacaaatataatataaattcctatct-tttttaatatcacgaacaatataacattaatataagaaaatttgtttaag 4205233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 6335925 - 6335849
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaa 222  Q
    ||||||||||||||||||||||||| | ||||||||| ||  ||||||  ||||||  |||| | ||||||||||||    
T  6335925 taacaaatataatataaattcttatctttttttaataccaccaagaatggaacattaatataggaaaatttgtttaa 6335849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 12826401 - 12826453
Alignment:
Q  191 aatataacattcttataaggaaatttgtttaagggtaattagaagtgaaaaag 243  Q
    |||||||||||| |||||  |||||||||||||||||||| | ||||||||||    
T  12826401 aatataacattcatataaacaaatttgtttaagggtaattgggagtgaaaaag 12826453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 4438602 - 4438542
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttata 207  Q
    ||||||||||||||||||||||||| | |||||||| | |  || |||||||||||||||||    
T  4438602 taacaaatataatataaattcttatct-tttttaatgataccaacaatataacattcttata 4438542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 13206126 - 13206202
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaag 223  Q
    ||||||||||| || |||||||||| | |||| | |||||  || ||||||||||||||| ||| |||||||||||||    
T  13206126 taacaaatatattaaaaattcttatct-ttttcattaacaccaacaatataacattcttaaaagcaaatttgtttaag 13206202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 35173379 - 35173431
Alignment:
Q  175 ttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||  || ||||||||||||||||| | | |||||||||||||||    
T  35173379 ttttaataacatcaacaatataacattcttataggaacatttgtttaagggta 35173431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 81895 - 81814
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  81895 taacaaatataatataaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 81814  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 5096508 - 5096589
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  5096508 taacaaatataatataaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 5096589  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 21018533 - 21018484
Alignment:
Q  17 cttaactttttgttgaaattaaattttaatttaaataaatttggaaaact 66  Q
    ||||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  21018533 cttaactttttgttgaagttaaattttaattaaaataaatttgtaaaact 21018484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 1292086 - 1292179
Alignment:
Q  150 aaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaaggg--taattagaagtgaaaaa 242  Q
    ||||||||||||||||||||| | |||||||| |||  || |||||| |||||||||||| ||||||||| ||| |  ||||| |||||||||||    
T  1292086 aaatataatataaattcttatct-tttttaatgacaccaacaatatagcattcttataagtaaatttgttaaagagtataattggaagtgaaaaa 1292179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 24389894 - 24389841
Alignment:
Q  174 tttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||| ||| ||||||||||| ||||||| ||||||||||| |||||    
T  24389894 tttttaataacattaacaatataacattgttataagaaaatttgtttatgggta 24389841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 31309815 - 31309734
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||  ||||| | ||||||||| ||  || |||||||||||  |||||  |||||||||||||||||    
T  31309815 taacaaatataatataaaaccttatctttttttaataccaccaacaatataacattaatataataaaatttgtttaagggta 31309734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 40358543 - 40358463
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||| | | |||||||||| | ||||||||||||  || ||||||||||| ||||| | |||||||||||||||||    
T  40358543 taacaaatatgacaaaaattcttatct-tttttaataacatcaacaatataacattgttataggaaaatttgtttaagggta 40358463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 32358920 - 32358849
Alignment:
Q  149 caaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgttta 221  Q
    |||||||||||||||||||||| | |||| ||| |||| || ||||||||||| ||||| | |||||||||||    
T  32358920 caaatataatataaattcttatct-ttttcaatgacaacaaaaatataacatttttatatgcaaatttgttta 32358849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 13703376 - 13703299
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagg 224  Q
    |||||||||||||| ||||| | || | |||||||||| | ||| ||||||| ||| ||||||| ||||||||||||||    
T  13703376 taacaaatataataaaaattatcatct-tttttaataaaactaacaatataagattattataagaaaatttgtttaagg 13703299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 13640694 - 13640665
Alignment:
Q  146 taacaaatataatataaattcttatttgtt 175  Q
    ||||||||||||||||||||||||||||||    
T  13640694 taacaaatataatataaattcttatttgtt 13640665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 13703075 - 13703046
Alignment:
Q  146 taacaaatataatataaattcttatttgtt 175  Q
    ||||||||||||||||||||||||||||||    
T  13703075 taacaaatataatataaattcttatttgtt 13703046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 39753588 - 39753669
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||| |||||||||||||||||| | ||||||||| ||  |||||| |||||||  ||||   |||||||||| ||||||    
T  39753588 taacaagtataatataaattcttatctttttttaataccaccaagaatgtaacattaatatagaaaaatttgtttgagggta 39753669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 30248203 - 30248163
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaa 186  Q
    ||||||||||||||||||||||| | | |||||||||||||    
T  30248203 taacaaatataatataaattcttgtatttttttaataacaa 30248163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 41879793 - 41879874
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  41879793 taacaaatataatataaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 41879874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 27263826 - 27263907
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  27263826 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 27263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 28394654 - 28394735
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  28394654 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 28394735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 31172286 - 31172367
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||| |||||||  ||||   |||||||||| ||||||    
T  31172286 taacaaatataatataaattcttatctttttttaataccaccaagaatgtaacattaatatagaaaaatttgtttgagggta 31172367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 28040304 - 28040229
Alignment:
Q  150 aaatataatataaattcttatttgttttt-aataacaataagaatataacattcttataaggaaatttgtttaagg 224  Q
    |||||||||||||||| |||||| ||||| ||| ||   || |||||||||||||||| || ||||||||||||||    
T  28040304 aaatataatataaatttttatttatttttgaatgacgccaacaatataacattcttatgagaaaatttgtttaagg 28040229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 42522718 - 42522780
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataag 209  Q
    |||||||||||||| |||||||||| | ||||||||||||  || ||||||||||| |||||||    
T  42522718 taacaaatataataaaaattcttatat-tttttaataacaccaacaatataacattattataag 42522780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 27598410 - 27598334
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaag 223  Q
    ||||||||| |||| |||||||||| | |||||||||| |  || ||||||||| | ||||||| |||||||||||||    
T  27598410 taacaaataaaataaaaattcttatat-tttttaataataccaacaatataacactattataagaaaatttgtttaag 27598334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 31202076 - 31202023
Alignment:
Q  174 tttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||  ||  |||||||||| ||||||| |||||||||||||||||    
T  31202076 tttttaataacaccaacgatataacattgttataagaaaatttgtttaagggta 31202023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 39850465 - 39850394
Alignment:
Q  150 aaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaa 222  Q
    |||||||||||||||||||||   |||||||||||  ||| ||||||||||| |||||   ||||||||||||    
T  39850465 aaatataatataaattcttatca-tttttaataactttaacaatataacattattatagacaaatttgtttaa 39850394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 23315975 - 23315894
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  23315975 taacaaatataatataaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 23315894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 24670152 - 24670080
Alignment:
Q  150 aaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaag 223  Q
    ||||||||||||||||||||| | |||| |||||||  || |||||||||||||||||   |||||||||||||    
T  24670152 aaatataatataaattcttatct-ttttaaataacataaaaaatataacattcttatagacaaatttgtttaag 24670080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 44689848 - 44689767
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||||||||| |||||| |||  ||| | |  || ||||||||||||||| ||  |||||||||||||||||    
T  44689848 taacaaatataatataaattattatttttttcaaatgatatcaataatataacattcttacaaacaaatttgtttaagggta 44689767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 22160426 - 22160350
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaa 222  Q
    ||||||||||||||||||||||||| | ||||||||| ||  || ||| |||||||  |||| | ||||||||||||    
T  22160426 taacaaatataatataaattcttatctttttttaataccaccaaaaatgtaacattaatataggaaaatttgtttaa 22160350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 55109938 - 55109844
Alignment:
Q  150 aaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaaggg--taattagaagtgaaaaag 243  Q
    |||||||||||||||||||| || |||||| |||||  || || |||||||||||||||  |||||| |||||| |  |||||| |||||||||||    
T  55109938 aaatataatataaattctta-ttatttttagtaacaccaacaaaataacattcttataatcaaatttatttaagagtataattaaaagtgaaaaag 55109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 6028628 - 6028702
Alignment:
Q  152 atataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||| | |||||||| |||  || |||||| ||||||| || | |||||||||||||||||    
T  6028628 atataatataaattcttatct-tttttaatgacaccaaaaatatagcattcttgtatgaaaatttgtttaagggta 6028702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 645989 - 646094
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagg--gtaattagaa-gtgaaaaa 242  Q
    ||||||||||| ||||||||||| ||| |||| ||| |||  || || |||| ||| |||| | |||||||||||||||  |||||||||| | ||||||    
T  645989 taacaaatatattataaattctttttttttttaaatgacacgaacaaaataatatttttatgatgaaatttgtttaagggtgtaattagaaggagaaaaa 646088  T
Q  243 gacaac 248  Q
    ||||||    
T  646089 gacaac 646094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 28715410 - 28715487
Alignment:
Q  149 caaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||| |||||||||||||||| |||||  || | ||  || ||||||||||| ||||||| |||||||||||||||||    
T  28715410 caaatgtaatataaattcttatctgtttgaaaga-caccaataatataacatttttataagcaaatttgtttaagggta 28715487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 33389900 - 33389991
Alignment:
Q  146 taacaaatataatataaattcttatttgttt---ttaataacaataagaatataacattcttataaggaaatttgtttaagggtaattagaa 234  Q
    ||||||||||||||||||||||||| | |||   |||||||||  || || |||| ||| ||||||  |||||||||||||| || ||||||    
T  33389900 taacaaatataatataaattcttatctttttgaattaataacaccaacaaaataatatttttataatcaaatttgtttaaggatatttagaa 33389991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 38490901 - 38490981
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | |||||||||||| ||| || | |||| | ||||||  |||||||||||| ||||    
T  38490901 taacaaatataatacaaattcttatct-tttttaataacattaataaaacaacagttttataatcaaatttgtttaaaggta 38490981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 4815951 - 4815875
Alignment:
Q  151 aatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||| | ||||||||| |  ||||||||||||  || ||||||||||| ||||| | ||||||| |||||||||    
T  4815951 aatataacaaaaattcttaatcttttttaataacaccaacaatataacattattatacgaaaatttgcttaagggta 4815875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 10981668 - 10981704
Alignment:
Q  191 aatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  10981668 aatataacattattataagaaaatttgtttaagggta 10981704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 24535334 - 24535278
Alignment:
Q  145 gtaacaaatataatataaattcttatttgtttttaataacaataagaatataacatt 201  Q
    |||| |||||||||| ||||||| |||| ||||||||||||  || |||||||||||    
T  24535334 gtaataaatataataaaaattctaatttttttttaataacaccaacaatataacatt 24535278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 44177008 - 44177089
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  44177008 taacaaatataatataaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 44177089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 3806736 - 3806655
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  3806736 taacaaatataataaaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 3806655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 44183689 - 44183770
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||||||||    
T  44183689 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaagggta 44183770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 37681416 - 37681336
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||| ||||| | ||||||||| ||  || |||||||||||  |||| | |||||||||||||||||    
T  37681416 taacaaatataatataaatccttatct-tttttaataccaccaacaatataacattaatataggaaaatttgtttaagggta 37681336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 37980365 - 37980284
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | ||||||||| |||||||    
T  37980365 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgttgaagggta 37980284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 19578748 - 19578670
Alignment:
Q  148 acaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||| ||| |||||| | ||||||||||||  || ||||||||||| ||||  | |||||||||||||||||    
T  19578748 acaaatataataaaaactcttatat-tttttaataacaccaacaatataacattattattggaaaatttgtttaagggta 19578670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 5846319 - 5846243
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaag 223  Q
    |||||||||||||||||||  |||| | ||||||||| || ||| |||||||||||  ||||||  ||||||||||||    
T  5846319 taacaaatataatataaatctttatct-tttttaataccactaacaatataacattaatataagataatttgtttaag 5846243  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 17583278 - 17583198
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||||||  || |||||||||||  |||| | |||| || |||||||||    
T  17583278 taacaaatataataaaaattcttatct-tttttaataacaccaacaatataacattactataggaaaatatgattaagggta 17583198  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 54114407 - 54114330
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggt 226  Q
    ||||||||||||||||||||||||||  ||||||||||| | |  |||||||||||| |||| | |||||||  |||||||    
T  54114407 taacaaatataatataaattcttatt--tttttaataac-acactaatataacattcatataggcaaatttgcataagggt 54114330  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 23914645 - 23914565
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    ||||||||||||||||||||||||| | |||| |||||||  || |||||||||||||||||   |||||||||||||||||    
T  23914645 taacaaatataatataaattcttatct-ttttcaataacacaaacaatataacattcttatagccaaatttgtttaagggta 23914565  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 40324369 - 40324450
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| |||||||||||||||||||    
T  40324369 taacaaatataatacaaattcttatatttttttaataccaccaagaatgtaacattaatatagggaaatttgtttaagggta 40324450  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 2383159 - 2383078
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||| ||||||||||    
T  2383159 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttatttaagggta 2383078  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 14690104 - 14690183
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| ||| |||| |||  |||||||||||  || ||||||||||| ||||| | |||| ||||||||||||    
T  14690104 taacaaatataataaaaaatctttttt--ttttaataacaccaacaatataacattattataggaaaatatgtttaagggta 14690183  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 30675540 - 30675607
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaat 214  Q
    |||||||||||||||||| |||||| | ||||||||||||  || |||||||||||  |||||| ||||    
T  30675540 taacaaatataatataaactcttatat-tttttaataacaccaacaatataacattaatataagaaaat 30675607  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 226394 - 226469
Alignment:
Q  145 gtaacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaa 222  Q
    ||||||||||||||| |||||||||||| ||||||||||||  || |||||||||||  |||||| ||||||||||||    
T  226394 gtaacaaatataataaaaattcttattt-tttttaataacacgaacaatataacatt-atataagaaaatttgtttaa 226469  T

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Target: scaffold1017 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 2043 - 2123
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||||||  || ||||||||||| |||||   |||| ||||||||||||    
T  2043 taacaaatataataaaaattcttatct-tttttaataacacaaacaatataacattattatagaaaaatatgtttaagggta 2123  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 13846610 - 13846529
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||| |||||||||| | ||||||||| ||  |||||| |||||||  |||| | |||||||||||| ||||    
T  13846610 taacaaatataatacaaattcttatctttttttaataccaccaagaatgtaacattaatataggaaaatttgtttaatggta 13846529  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 8866868 - 8866929
Alignment:
Q  146 taacaaatataatataaattcttatttgtttttaataacaataagaatataacattcttataa 208  Q
    ||||||||||||||||||||||||| | |||||||| |||  || |||| |||||||||||||    
T  8866868 taacaaatataatataaattcttatct-tttttaatgacaccaacaataaaacattcttataa 8866929  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 11573419 - 11573365
Alignment:
Q  174 tttttaataacaataagaatataacattcttataaggaaatttgtttaagggtaa 228  Q
    ||||||||||||  |||||||||||||| |||||   ||||||||||||||||||    
T  11573419 tttttaataacaccaagaatataacatttttatagaaaaatttgtttaagggtaa 11573365  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 33803894 - 33803968
Alignment:
Q  153 tataatataaattcttatttgtttttaataacaataagaatataacattcttataaggaaatttgtttaagggta 227  Q
    |||||||||||||||||| | |||||||| |||  || |||||| |||||||||| | | ||||| |||||||||    
T  33803894 tataatataaattcttatctttttttaatgacaccaacaatatagcattcttatatgcatatttgattaagggta 33803968  T

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